Gene PICST_52636 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_52636 
SymbolYPT53 
ID4851160 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009068 
Strand
Start bp1082445 
End bp1083167 
Gene Length723 bp 
Protein Length230 aa 
Translation table 
GC content45% 
IMG OID640392868 
ProductGTP-binding protein of the rab family 
Protein accessionXP_001387436 
Protein GI126274146 
COG category[R] General function prediction only 
COG ID[COG1100] GTPase SAR1 and related small G proteins 
TIGRFAM ID[TIGR00231] small GTP-binding protein domain 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAAACG ACATTGACAT ACCTCCGCCT TCGTACAAGA TAGTCTTGTT GGGTGACTCA 
TCTGTAGGGA AGACATGTTT GGTACACAGA TTTATTACGA ACAAATTTGA CCAAAATACG
GCGAACACTA TCGGGGCAGC TTTCATCACC AAAAAGTACA CATCTGCGAA CAAGCCAGAT
AGGCAGTTGA AGTTTGAGAT CTGGGACACG GCCGGTCAGG AACGATACCG TTCACTTACT
CCTATGTACT ATCGTAATGC CAAAGTAGCG TTAGTTTGTT TTGACATGAA CAACTTTGAA
ACGACGTTCA AGACTGCGAA GTTCTGGATC GAGCAGATTG AATTAAACGG TGCTACTGAT
GCGTCAGATC CCATAGAAAT ACGGCTCGTG GGAAACAAGA TGGATTTGTT CGACAAGCCG
CAGCCAGAGG ATTTAACGGA AGAACAACAG AACAGGGCTA AAGACCAGAA ACAGGAGTAT
ATAGACACCA TAGAAGAGTT CTGTAGAACT AACAACACTA TCACCTTCCA CAGGACAAGT
GCGAAGGATG GCAGTGGGGT GACGGAGGTA TTTGATAGCA TTATCGATAA TCTTGATGAT
GATTTCTTCA AGTTTTATTT CGATAAAAAG AGGGCCGAGT TGGAGGCTGG ACGGGACGGA
GACCAACTCT CGAATATATT GGGTAGCCGT CTTCAGAATA CCGCTACCTC ACGTTGTTGC
TGA
 
Protein sequence
MENDIDIPPP SYKIVLLGDS SVGKTCLVHR FITNKFDQNT ANTIGAAFIT KKYTSANKPD 
RQLKFEIWDT AGQERYRSLT PMYYRNAKVA LVCFDMNNFE TTFKTAKFWI EQIELNGATD
ASDPIEIRLV GNKMDLFDKP QPEDLTEEQQ NRAKDQKQET NNTITFHRTS AKDGSGVTEV
FDSIIDNLDD DFFKFYFDKK RAELEAGRDG DQLSNILGSR LQNTATSRCC