| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_52414 |
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| Symbol | NEO1 |
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| ID | 4851466 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | + |
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| Start bp | 1882268 |
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| End bp | 1885834 |
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| Gene Length | 3567 bp |
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| Protein Length | 1177 aa |
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| Translation table | |
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| GC content | 46% |
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| IMG OID | 640393174 |
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| Product | ATPase that leads to neomycin-resistant protein when overexpressed |
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| Protein accession | XP_001387599 |
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| Protein GI | 126274594 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0474] Cation transport ATPase |
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| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01652] phospholipid-translocating P-type ATPase, flippase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACGGC GGTACTCGTT TTCCGACGAC GGTAACTCGT TTGAGGACCT TGAGACTTCG
CTCGATAAGG CCCTCAACCA TGCGCTGAAC AACTTGTTCA GTTATACCAA CACCTCCAAT
GGCCATGGCA ACGGATCCAG GACAAATTCG CAGGGGTCCG CGGGTGCCAT CCCGCTCGCA
ACAATGGCTC TGTATCCGGG GGATGGATCC GGCCACGGTA TGGCCCGCTC AGCGTCAGCC
GAACACAACG ACTCTTCACC ACTCATAGCC TCCAATCTCT ACGCTAATCA TAATAGACTG
TTTCTGTCGT CAGCATCATC GCTCAACGCC ACGGCCCGTT CGTTGCTGAT GCTGCTGAAG
CGCTTTCTCC GGAAAGCGCT TGGCTTTTTC CGTCACGCTC ATCGCGAGTT ATCCCTGAAC
GGCGACAGAC TCCGACTCTC TAGTGGAGAT GCTGCTTTAG GCTCCACCTC CGTCGGCAGA
AACGGGTCTG GTCCCAGTTC TGAGTCTTCA CAACGGTTTA TCTCGCCCCG AAGTAAGTCC
ACTACAACCA CATATCCCTC TAATGCCATC TCGAACGCCA AATACAATCC CATCACCTTC
ATTCCCATTA TCTTATATGA GCAGTTTAAG TTCTTCTTCA ACTTGTACTT CCTCGTCGTA
GCTCTCTCAC AGATCATTCC TCAGTTGCGG ATCGGCTACC TTTCCTCGTA TATTGTTCCG
CTCGGGTTTG TGCTCACAGT GACAATGATG AAAGAAGCGG GTGACGATAT TGCCAGACGT
CGTCGTGACC GTGAACAGAA CAATGAACTC TACGAAGTAC TCAATCGCAG CTCTCCTTCG
GCTTTAAGCA ACGAAATCAA GTTGATACCG TCGCGCAATT TGAAGGTGGG AGACTTAGTC
CGACTCCACA AAGATACGCG GATTCCTGCT GACATGGTCT TACTTCAGAC TTCCGATAAA
GACGGATCAG GAGAAGCGTT CATTAAGACT GACCAGCTAG ATGGAGAAAC TGATTGGAAG
CTCCGAATTG CCAACAGTGC TTCCCAGTCG TTGACAGACA TAAATCTGCT AATTAACAAC
ATCTCGCTTA TCGTAGGAAA TCCCACTAAG TCTATCCACC ATTTCAACGG AAAGTTGATT
TACCATCCGC TGCTGGCAGC AGGCTCTACA CTGCCTACCT CCAGTAACGA GACCATAGCA
TTAACCGTCG ACCAGACATT ATGGGCCAAC ACGGTCTTAG CGTCTGGAAC AGCAATAGCA
ATCGTAGTGT ATACCGGTGT AGAAACGCGA CAGGCCATGA ACACCACCAT GACGGGAGTG
AAAACGGGCT TGTTAGAGTT GGAAATTAAC AGTTTGTCCA AGATTTTGTG TTTCACGGTG
TTTTTGTTGT CTGTGGTTTT GGTCTTGGCC AATGGGTTTC CCTTGAAGTC AACATGGTAC
ATTGATATCA TGCGATTCTT GATTTTATTC TCTACCATCA TTCCGGTTTC CTTGAGAGTG
AACTTGGATT TGGCCAAATC GGTGTACGCC TCTCAGATCC AAAAAGATGA CGAGATCCCT
AACACCATTG TCAGAACCTC GACGATTCCC GAAGATTTGG GCAGAATCGA GTACTTGCTT
TCTGACAAGA CGGGCACTTT GACACAGAAC GATATGGAAC TCAAAAAATT GCATTTAGGT
GCGGTCAGCT ATGCTGGCGA CACCATGGAC ATTGTTACTG ATTATATAAC TTCAATGCTA
TCTATTCTAG ATTCCAAGCC TTCCGGAAGT ATGAAGAAAC GAGACTTGGG ATCCAAGGTG
TGTGACTTGG TCTTAACTTT AGCACTCTGT CACAATGTGA CTCCTTCCTA TGAAGACGAA
GAGGATGAAG CAGCAGGCAT CGTTACGTAC CAGGCCGCTT CTCCCGACGA AATCGCCATA
GTCAAGTTTA CCGAGTTGGT AGGCTTGAAA TTATACAAAA GAGATAGACA CACCATTTCT
TTGATGCATT TGGCTACGGG TAAAACTTTT GACTACGAAA TCTTATACAA CTTCCCGTTT
AATTCCGATA CCAAGAGAAT GGGTATCATC GTAAAAGATA GCCAGCGAGA TGAAATATGG
TTCATGCAAA AAGGAGCCGA CACGGTCATG ACCACAATTG TTAACTCTAA CGATTGGCTA
GATGAAGAAA CTGGTAATAT GGCCAGAGAA GGACTAAGAA CTTTAGTGAT TGGGCGTAAG
AGACTCAGTT CGATCCTCTT CAAGGATTTT GTCGAGAGTT TCCAAAACGC TTCTTTGGCT
ATGCATGACA GAGAGGCAAC TATGCAAAAA ATTGTCAGTC AATACTTAGA GCAGGATCTA
GAGCTCTTGG GATTAACTGG TGTTGAAGAT AAGTTGCAGC GTGATGTGAA GACTTCCATT
GAGCTCTTGA GAAATGCTGG GGTCAAGATC TGGATGTTGA CAGGTGACAA GGTTGAAACT
GCCAAGTGTG TTTCGATCAG TGCCAGGTTG ATTTCCCGGG GCCAGTATGT TCACCAGATC
ACCAAAATTA ACCATCCGGA TCTTGCTATG AACCAGTTGG AATATTTGAA GACTAACACC
AACGCTTGCT TGTTGATTGA TGGTGAATCG CTTGCAACGT ACATGAAGTT TTTCAAACAC
GACTTCTTTG AAATCGTAGT TAAGTTGCCA GCTGTAATCG CCTGCAGGTG TTCTCCACAG
CAGAAAGCCG ACGTTGCCTT GATGATTAGA GAAATCACTG GTAAAAGGGT ATGTTGTATT
GGAGACGGTG GGAACGATGT CAGTATGATT CAATGTGCGG ATGTGGGTGT GGGTATTGTA
GGAAAGGAAG GAAAGCAGGC ATCATTAGCA GCAGATTTCA GTATCGATCA GTTCTGTTAC
TTGCTGAAGT TGCTCTTATG GCATGGCAGA AACTCGTACA AGCGTTCGGC AAAGTTGGGA
CAGTTTATTA TCCATCGTGG ATTGTTGATT TCTGTAGCGC AAGCTGTATA CTCCATTTCC
AGCAAGTTTG AACCTCTAGC CTTGTACCAG GGCTGGTTGA TGGTAGGTTA TTCTACTGTG
TATACCATGG CTCCTGTTTT CTCGTTGACT TTGGACTGCG ATATAGATGA GCATTTGACA
AGGTTGTATC CCGAGTTGTA CAAAGAATTA ACCTTGGGCA AGTCGTTGTC GTACCGAACC
TTTTTCATGT GGGTAGCGAT TTCATTATTC CAGGGCAGTG TGATCCAGCT CTTGTCGCAA
CAATTCCAGA CTGTCAAGTT GGAGAACTTT AAGACCATGG TAGCGTTGTC GTTCTCGTCT
TTGATCTACA ACGAGTTGAT CATGGTAGGT TTGTCCATCA ACAAGTGGAA CAAGGTAATG
GTTAGTACTA TCATTATCAC ATTCTTGATC TACATAGGCT CGGTTCCCTT CTTGGGCGAA
TACTTTGATT TGGAGTACGT TAGCTCTGTC AGCTACATCT GGCAAGTGGC TGTGCTCTTG
GCCATCAGTT TGTTCCCTGT CTGGTTGTCT CAGTACATTA ATAGAAAGTT GAGACCTCCT
AGTTACGCCA AGGTTCAAAC AGACTAA
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| Protein sequence | MSRRYSFSDD GNSFEDLETS LDKALNHALN NLFSYTNTSN GHGNGSRTNS QGSAGAIPLA
TMALYPGDGS GHGMARSASA EHNDSSPLIA SNLYANHNRL FLSSASSLNA TARSLLMLLK
RFLRKALGFF RHAHRELSLN GDRLRLSSGD AALGSTSSSQ RFISPRSKST TTTYPSNAIS
NAKYNPITFI PIILYEQFKF FFNLYFLVVA LSQIIPQLRI GYLSSYIVPL GFVLTVTMMK
EAGDDIARRR RDREQNNELY EVLNRSSPSA LSNEIKLIPS RNLKVGDLVR LHKDTRIPAD
MVLLQTSDKD GSGEAFIKTD QLDGETDWKL RIANSASQSL TDINLLINNI SLIVGNPTKS
IHHFNGKLIY HPLLAAGSTL PTSSNETIAL TVDQTLWANT VLASGTAIAI VVYTGVETRQ
AMNTTMTGVK TGLLELEINS LSKILCFTVF LLSVVLVLAN GFPLKSTWYI DIMRFLILFS
TIIPVSLRVN LDLAKSVYAS QIQKDDEIPN TIVRTSTIPE DLGRIEYLLS DKTGTLTQND
MELKKLHLGA VSYAGDTMDI VTDYITSMLS ILDSKPSGSM KKRDLGSKVC DLVLTLALCH
NVTPSYEDEE DEAAGIVTYQ AASPDEIAIV KFTELVGLKL YKRDRHTISL MHLATGKTFD
YEILYNFPFN SDTKRMGIIV KDSQRDEIWF MQKGADTVMT TIVNSNDWLD EETGNMAREG
LRTLVIGRKR LSSILFKDFV ESFQNASLAM HDREATMQKI VSQYLEQDLE LLGLTGVEDK
LQRDVKTSIE LLRNAGVKIW MLTGDKVETA KCVSISARLI SRGQYVHQIT KINHPDLAMN
QLEYLKTNTN ACLLIDGESL ATYMKFFKHD FFEIVVKLPA VIACRCSPQQ KADVALMIRE
ITGKRVCCIG DGGNDVSMIQ CADVGVGIVG KEGKQASLAA DFSIDQFCYL LKLLLWHGRN
SYKRSAKLGQ FIIHRGLLIS VAQAVYSISS KFEPLALYQG WLMVGYSTVY TMAPVFSLTL
DCDIDEHLTR LYPELYKELT LGKSLSYRTF FMWVAISLFQ GSVIQLLSQQ FQTVKLENFK
TMVALSFSSL IYNELIMVGL SINKWNKVMV STIIITFLIY IGSVPFLGEY FDLEYVSSVS
YIWQVAVLLA ISLFPVWLSQ YINRKLRPPS YAKVQTD
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