Gene PICST_52198 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_52198 
Symbol 
ID4851205 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009068 
Strand
Start bp1191379 
End bp1192617 
Gene Length1239 bp 
Protein Length412 aa 
Translation table 
GC content42% 
IMG OID640392913 
Productzinc finger protein with unknown function 
Protein accessionXP_001387457 
Protein GI126274191 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.038348 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTACGT GTAATACCTG TAGTTTGCAG TTTCCCACCG CTGAAGACCA GCGGGTTCAC 
ATGAAGTCAG AATGGCACCG TTACAATCTC AAAAGAAGAG TAGCCCAGTT ACCTTCGATA
GATGAAGATA CTTTTAACTC CAAAGTAGCC TCATTAACTT TGACAGAAGA GGAAGAGCCC
AAAAAGAAAG AAAAGCAAGT GACTAAGAAG GAGCAAAGAA GAAGAGATAA GGAAGCTATA
CAAGCTAAAA AGAGAGAGAT CTTAGAAACA GCCAAGAGAG CTATGTTAGC TAAGATGAAA
GAGAATGGAG AAATGCCTTC TGAACAAACC GAGAATGTCG AACAAGCTGA AGACAGCAAA
CAAGTTGAAG AAGTTTCTCC AGAAAATGTT GAAGATAAAG ATGAAATAGT TGAAAAGACA
GAGCATGAAA ATGAAACTCC TCTCACTATC GAAGAAGAAG AAAAGAAGTT GTATGAAGAA
AAGATGGCCA ATAAGATTGA GATCACACCC ACAACGTGTT TGTTCTCACA TCCCAAGTAT
AATAAGGTAT TTGACACTGT AGATGAGAAT ATTGAACACA TGTGGAAGAA CTTTGGTCTC
TACATACCTG AACAGAACTA CTTGGTAGAC AAGGAAGGTT TGATAGGGTA CTTGGGAGAA
AAGATCAGTT TCGGTTTCTG CATAGCCTGT AGCTACCAGG GCCGTAATGC CGAAGCTGCA
AGAGAGCACA TGAAGCAAAA GAGACACATG AGAATACCAT ACGAGACTGA GGATGAAAAA
TTGGAGATTT CACAGTTTTA CGATTTCTCT TCCACCTATG ACGATGTAGT TCCTGTTACA
AATGGAGATG ACGAAGGAGA ATGGGAAGAT GTTTCTGAAG AAGAAGGCGA AGGAAGTGAA
GATGACGATG AGGATGGAGA CGATTTACCT CTTCCAGAAC ACGATGCCCT CTACCAGCAT
GGTCATGAGC TTGTCTTGCC TTCTGGTGCA GTTATTGGCC ATCGTTCCAT GGCCAGATAC
TACAGACAGA ACTTGGCTCC GGAAAGAGTA TTATCTGAAG GCCAGGGTAC AGTTATTGCT
GCTGAGACTA GACACATGAT GACTGTGAGA GACAGACAGG TATTGGCTAC CCAGAAGAGA
GCATGGGGCA GACAGAAGAA GAGAGAAGAT ATTAACGACA GAAGGGCTGC TAAGTTTGTT
AACAACCAAC CTTACTACAG AGACCAGTTA TTGCAATAG
 
Protein sequence
MFTCNTCSLQ FPTAEDQRVH MKSEWHRYNL KRRVAQLPSI DEDTFNSKVA SLTLTEEEEP 
KKKEKQVTKK EQRRRDKEAI QAKKREILET AKRAMLAKMK ENGEMPSEQT ENVEQAEDSK
QVEEVSPENV EDKDEIVEKT EHENETPLTI EEEEKKLYEE KMANKIEITP TTCLFSHPKY
NKVFDTVDEN IEHMWKNFGL YIPEQNYLVD KEGLIGYLGE KISFGFCIAC SYQGRNAEAA
REHMKQKRHM RIPYETEDEK LEISQFYDFS STYDDVVPVT NGDDEGEWED VSEEEGEGSE
DDDEDGDDLP LPEHDALYQH GHELVLPSGA VIGHRSMARY YRQNLAPERV LSEGQGTVIA
AETRHMMTVR DRQVLATQKR AWGRQKKRED INDRRAAKFV NNQPYYRDQL LQ