| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_52197 |
|---|
| Symbol | DIP5.5 |
|---|
| ID | 4851474 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009068 |
|---|
| Strand | + |
|---|
| Start bp | 1916428 |
|---|
| End bp | 1918152 |
|---|
| Gene Length | 1725 bp |
|---|
| Protein Length | 574 aa |
|---|
| Translation table | |
|---|
| GC content | 44% |
|---|
| IMG OID | 640393182 |
|---|
| Product | Proline specific permease |
|---|
| Protein accession | XP_001387605 |
|---|
| Protein GI | 126274602 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0833] Amino acid transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0650572 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGGAAA AGTCTGACTT GGCTAATGTG AAGTCTTCTA GCTCTCATGT TCATATTCAC
AGAGCAGATA CTTCCTTGCT TGACCTCTCA ATTTCCAACT CAAGAGTGGT CGTAGAGGAC
GGAGGAAGAA TCTTGACCCC AAGACACTCC AACCCCGACT CGTTTGAGAC TTTTCAACTG
AACCAGTTGG AAAGAGGCTT GAAAGCTCGT CATGTTTCTC TTCTTTCTTT GGGTGGTGCT
ATCGGAACTG GTCTTTTTGT GGGGTCCGGT TCCGCTCTCT CCACTTGTGG TCCTGCTAGT
TTGGTGTTGA GTTATGCTAT CATGTCGTCG GTAGTGTACT TTGTCATGCA AATGTTGGCT
GAAATGACCA CATTCTTACC ATTACCTGGT AGTGGTGCAC AATCGTTTGT TAACGATTAC
CTTTCTGAAT CCTTTGGTTT TGCTATTGGA TGGAACTACT GGTACGCATT TTCTATATTG
GTCGCTGCTG AGGTTACTGC AGCTGCTATT GTTGTACAAT ATTGGATCAC TTCTGTCAAT
ATTGCTGTTT GGATCACCAT CTTCTTGGTT CTCATTATCT TGTTGAACAT CATCTCGGTC
AGATTTTTCG GTGAAGCAGA ATTCTGGTTC GCTTCCATTA AATTGATCAC TCTTACTGGT
TTAATCATTT TGGGTGTTGT TCTTTTCTTC GGTGGTGGTC CAAGCCACGA CAGATTGGGA
TTCCGTTACT GGAAGCACAG CCCTTTTAAA GAACATATTG TTGGCGGATC TACAGGCCGT
TTCCTCGGTA TATGGACAGC CATTGTCAAG TCCGGTTTTG CTTTTATTTG TTCTCCAGAA
TTGGTTGCCG CTGCTGGTGG TGAGTGTAGA AAGCCAAGAC GTAACATTCC AAAGGCTGCC
CGTCGTTTCA TTTACAGATT GGTATTCTTC TATATCCTCG GTACATTGGT CATCAGTGTC
ATTGTCAGCT CAAAAAACCC AAGATTGTTG TCTGGCTCCT CCGACGCTTC TGCTTCTCCT
TTCGTTATCG GTATCCAAAA CGCAGGTATC CCAGTATTGA ACCACATCAT TAATGCTGCT
ATCTTGACTT CGGCTGCATC TGCTGGTAAC TCTTTCCTTT ACTCGGCCTC TAGATCTTTG
TATTCTATTT CTTGCAGAGG ATTAGCTCCA AAGATCTTCA GCAAGGTGAA CAGATTTGGT
GTTCCAGTTT ATGCTGTCGC ATTGTCATCT GCATTGGGCT TCTTGGCTTA CCTTAACGTC
TCATCTTCTT CTGCAAACGC TTTCAACTGG TTTTCTAACC TTACAACAAT CAGTGGGTTC
ATTTCTTGGA TTTTGGTTGC CTTTGCCTAT TTGAGATGGA GACGTGCCAT TGCATACCAT
GGCTTATCCG ATAGAGTAAC ATACAAATCT CCATTCCAAC CTTTCGGTGC TTACTATGTG
ATATTCTTTA TTTCGCTCCT TTCAATCACT AACGGTTACG CTGTATTTTT CAACTTCAAC
GGCCCTGACT TCGTTGCCGC TTACATTACC CTTCCAATTG TTGTTTTCCT TTACGTTGGC
CACAGAGCCT GGAGCTACTT CACCAAGGGC CAACAGAACT GGCTCAGACC AATCAAGCAG
ATTGACGTAA TAACCGGCTT AGATTTGATA GAAGAGGAGG ATGCGAACGA GCCCGAACCA
GTGCCTAAGA ACCTTTTGGA AAAGATCTGG TTCTGGGTTG CCTAA
|
|---|
| Protein sequence | MMEKSDLANV KSSSSHVHIH RADTSLLDLS ISNSRVVVED GGRILTPRHS NPDSFETFQL
NQLERGLKAR HVSLLSLGGA IGTGLFVGSG SALSTCGPAS LVLSYAIMSS VVYFVMQMLA
EMTTFLPLPG SGAQSFVNDY LSESFGFAIG WNYWYAFSIL VAAEVTAAAI VVQYWITSVN
IAVWITIFLV LIILLNIISV RFFGEAEFWF ASIKLITLTG LIILGVVLFF GGGPSHDRLG
FRYWKHSPFK EHIVGGSTGR FLGIWTAIVK SGFAFICSPE LVAAAGGECR KPRRNIPKAA
RRFIYRLVFF YILGTLVISV IVSSKNPRLL SGSSDASASP FVIGIQNAGI PVLNHIINAA
ILTSAASAGN SFLYSASRSL YSISCRGLAP KIFSKVNRFG VPVYAVALSS ALGFLAYLNV
SSSSANAFNW FSNLTTISGF ISWILVAFAY LRWRRAIAYH GLSDRVTYKS PFQPFGAYYV
IFFISLLSIT NGYAVFFNFN GPDFVAAYIT LPIVVFLYVG HRAWSYFTKG QQNWLRPIKQ
IDVITGLDLI EEEDANEPEP VPKNLLEKIW FWVA
|
|---|
| |