Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_52187 |
Symbol | IPM1 |
ID | 4851090 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009068 |
Strand | + |
Start bp | 906636 |
End bp | 907823 |
Gene Length | 1188 bp |
Protein Length | 395 aa |
Translation table | |
GC content | 43% |
IMG OID | 640392798 |
Product | Pex24p Integral peroxisomal membrane peroxin |
Protein accession | XP_001387404 |
Protein GI | 126274076 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.000878159 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.869225 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAGATG ACGACGTGCT AGTGGCTTCG TTCGAGCCTT CGGATGCTAA AAGACTAACC AACTCCACCA ACACCAATTT GCTTGTGGAG TCTCCCATTT TGGCATCCGC GTTATCGAAC ATATTCCCCT ACTTACTACT TCTTGACAAT GTGTTGGAGG TGATCACATG GACCAATGAC GATCCGTACC AGAACTTTTT GTTCATTGTG ATTTATTCCT GGCTAGTCAT GTATTGGCAT TCCATCAGCT ATATTATTTT GCCCATAATT ATGTCAATAA CGTTCTCGGC TCTTGTATGG TCAATCAGTT CTGTGATATA TGATTCAAAA TTCGACGAAA AGCCAACTAT AGACGAGATC CTTCATACTT TGCACAATAT CACTATTCGC TTCGATATGC TTCTTAGACC CATGAAGCAC ATTCCGTTTA AGTTCAAAAA CTACGTCAAA TTACTCGTGA TGTCGGCTCT CCTCACACCA CTCCACTGGT TTATAGTGTC GTACATAGTA CCTCCCCAGA AGTGTGTCTG GTTCCTGGGG GTGTTTATCT TGACTTACCA CTCACCGTGG GCATTTTCCA TCAGAAGACT CTTGTGGCGT TCGGTCTACG TAAGAATTGC CGCAGTCTAC TTGACTGGTT TAGATATCAA GATTACTAAG AAGTACAACC CTGCTGACTT CCAGTCTATA TCTCGTGTAC AGAGTCCCAC GTCTAGTGAT ATTGAAGAAC TCAACAATGT CCCTCTACTC ACGGACTTCA AGATTTTGAA GAAATCTATG GTGTCTCCTA CCCAGCTTAA ACAGATAATC TTGTTTGAGT TGTTAGAGAA CGAAAGAAGA TGGATAGGAC TCGGCTGGAG TAACCTTTTG TTGCCCAACG AAAGAGCAAA CTTTGTCCAC GAAAAATCGT TGGCTGCGGC CCCTTCTGTA GAAAATACCA GGGATGACTA TCCATTTCCA ATTTTTGAAA ACGATATCTA CTCGTACCTG TGGGACTGGC TCGACACAGA CTGGAGACTC GACAGCGACT TCAACAACAA GGGGTCCAAA GACGGCTGGG TGTACTACGA CAACAATTGG ACTAACGGAT CCAACAGGGA TGGATTCAGT AAGTATACCA GATCAAGAAA ATGGATCAGA AAAGCTATAC TTTTGATAGA CAAACGGGAA ACGGTTCATG ACGCATAG
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Protein sequence | MADDDVLVAS FEPSDAKRLT NSTNTNLLVE SPILASALSN IFPYLLLLDN VLEVITWTND DPYQNFLFIV IYSWLVMYWH SISYIILPII MSITFSALVW SISSVIYDSK FDEKPTIDEI LHTLHNITIR FDMLLRPMKH IPFKFKNYVK LLVMSALLTP LHWFIVSYIV PPQKCVWFLG VFILTYHSPW AFSIRRLLWR SVYVRIAAVY LTGLDIKITK KYNPADFQSI SRVQSPTSSD IEELNNVPLL TDFKILKKSM VSPTQLKQII LFELLENERR WIGLGWSNLL LPNERANFVH EKSLAAAPSV ENTRDDYPFP IFENDIYSYL WDWLDTDWRL DSDFNNKGSK DGWVYYDNNW TNGSNRDGFS KYTRSRKWIR KAILLIDKRE TVHDA
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