| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_51550 |
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| Symbol | RFX1 |
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| ID | 4851288 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | + |
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| Start bp | 1417970 |
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| End bp | 1420198 |
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| Gene Length | 2229 bp |
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| Protein Length | 719 aa |
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| Translation table | |
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| GC content | 39% |
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| IMG OID | 640392996 |
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| Product | DNA binding protein |
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| Protein accession | XP_001387499 |
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| Protein GI | 126274274 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0273348 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | AACCTCTCGA TTTCGTCTCA TTTTAATCTC TTCTCGTTGA GTGAAGATAC CTCTAAGCGT
ATGGCTCCTG CTCCGAACGA TACCTCCATA ATCAACGAAC TATTGATTAG TTTGACAAAC
GTGGACGGCT CCAACATTAA TAACTACCTC TTGTCGCTTC TTGTAAGATT GAATCTTCCT
TTCCCCATCG ACGACTTTTA CAATTTGTTG TACAACAATG ACAGAGCAGG CTCCTTGATC
CAGCTTGATC AGCCGCAGAA GCTTGATAAA ACTCCAGTAG ATAGAAACAA CGAGTTAGTT
ATACGCACAA TCACCCAGTT GCTCAATATC TTCAAAAGAC CAGATCTCCT ACTGGACATG
TTGCCCAACT TGGAAGACAA AGAGAACAAG TTGGTAAGCA TCAACTACCA TGAGCTTCTT
CGTAGTTTCT TGGCAATAAA GGTCCTCTTT GACATCCTAA TACAGTTGCC TCTTTCGTCA
GACGATGATC CCCAGAACTA CACCATTCCC AGACTCTCCA TCTACAAAAC CTACTATATT
ATCTGCCAGA AGTTGATCTT GACATATCCT AGCTCTTCTA ATACTACTAA CGAGCAACAG
AAGTTGATTC TAGGCCAGTC CAAGCTCGGA AAGTTGATCA AACTCGTGTA TCCCAACTTG
TTAATCAAAA GATTGGGAAG TAGAGGTGAA TCCAAGTACA ACTATTTGGG CGTCATCTGG
AACGACAAGA TCATCAATGA CGAGATCGCG CGTCTTTGTG AAAATAACGA CTTGCTCGAG
TTAACTGAGA TCTTCAAAGG AGAGCAGATG ATGCCTAGAA CCTCTATTTC GGGTCCTGTT
AAAAAAGTTC ATAGACGATC CTCCAGTAAG GGAAAGGTCA AATTGGAACA CATCAAGAGA
ACTTCCGTAG ATCATGGCTA TCCAGGAAAA TCTGGAGTAA TAGAGCCAGT CTTGCCACCT
CCTCTAGCAA CGAGTACTGA ATCGAGTAAC CAGATTTCCA GTCCATCTTT ATCGTTTATA
AAACCATTTT TACGGTATCC TCAGGATGAG AACTTTACTG CCTTGAACGA TGAGGAGAAT
TGGTTCAATG AGATCAGATT GCAAGTTTAC TCTTCGCATA CTGTTATCAA TCGTGACATG
ATCCATCAGA TCTTTCTTGA CAGCTCTAAC TTGTCGACCA ACTCGAGTCT CTTGGATAAC
TTATTGGAGA TGTTAATGAA ACCGATTGAT GTCCTTAATA ATGAACCTAA CATAGATTTG
AACTTGTATT TGATTATCAT AGTGGAAATT CTTCCGTATT TGATGTTGAT AAAATCATCT
ACCAACATCA ATTTCTTGAA AAATCTCCGG TTGAACTTAT TACATTTGAT CAACAATCTT
AATCCCAACA TCAAGAAGCT CAACTTGAAG ACTTTCAGCA TCAACAACTC CAGCATCTTC
TTGGTTCTTG TCAAGAAATT GATCAACCTC AACGACTTGT TGATTACCTT CATCAAGTTG
ATCATCAAAG ATGATACTAC ATCCATCATG TCAACCGATA TTGAAACGTT TTTGAAGGTA
AACTCCAGTC AATCAGCTAG CGGTGTCAAG CTAGAAGATC AGGATGAAGA TTCATTTTTC
CTCAACTTGA ATGCCAACTT GAGCAATTCT TTAGGTGATT TAAATTTCAA CTTCAAGAAT
GATATCTTAT CGAATGATCT CGTATATGCT TTGGTTGGCT ACAATTTTGA CCCAACATTA
TTTCAGGATT TGAAATCATC GATTTCGATG AGCTTCATCA ACGAAGAAAT CAACATCATC
GACGACTTCT TCAAAAAGGA CTTGTTCGCG TTTTTGAACG ATAACAGCTT CGATTCTGAG
TCTGAAGCTA CTAGCGGTAC TCATTCTGAG ACTGGCGAAG CCAAGAGAGA GTCTGATCTG
ATCTTATCTA CAAAGGAGTT GTCCAAATTG TACTCCTTGA TTAGTCTCAT TGACAGGAAG
TTGTTAGCAA ATCACTACAA GTCAAAATAT CCCATCATGA TCTACAACAA CTTTGTAAGC
TACATCCTTA ATGATATTTT GAAATTCATC TTCTTGAAGC AACAGCAGGT GCAACTTCAA
AACCTACAAA CCAACACGGA AGTTGAGGCT CCCAATAGCT TCGGTAATTG GTGGGTCTTC
AATTCGTTTA TTCAGGAGTA CTTGAGTTTG ATGGGCGAGA TTGTTGGATT ACATGATTCA
ATCTCCTAG
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| Protein sequence | NLSISSHFNL FSLSEDTSKR MAPAPNDTSI INELLISLTN VDGSNINNYL LSLLVRLNLP
FPIDDFYNLL YNNDRAGSLI QLDQPQKLDK TPVDRNNELV IRTITQLLNI FKRPDLLLDM
LPNLEDKENK LVSINYHELL RSFLAIKVLF DILIQLPLSS DDDPQNYTIP RLSIYKTYYI
ICQKLILTYP SSSNTTNEQQ KLILGQSKLG KLIKLVYPNL LIKRLGSRGE SKYNYLGVIW
NDKIINDEIA RLCENNDLLE LTEIFKGEQM MPRTSISGPV KKVHRRSSSK GKPVLPPPLA
TSTESSNQIS SPSLSFIKPF LRYPQDENFT ALNDEENWFN EIRLQVYSSH TVINRDMIHQ
IFLDSSNLST NSSLLDNLLE MLMKPIDVLN NEPNIDLNLY LIIIVEILPY LMLIKSSTNI
NFLKNLRLNL LHLINNLNPN IKKLNLKTFS INNSSIFLVL VKKLINLNDL LITFIKLIIK
DDTTSIMSTD IETFLKVNSS QSASGVKLED QDEDSFFLNL NANLSNSLGD LNFNFKNDIL
SNDLVYALVG YNFDPTLFQD LKSSISMSFI NEEINIIDDF FKKDLFAFLN DNSFDSESEA
TSGTHSETGE AKRESDLILS TKELSKLYSL ISLIDRKLLA NHYKSKYPIM IYNNFVSYIL
NDILKFIFLK QQQVQLQNLQ TNTEVEAPNS FGNWWVFNSF IQEYLSLMGE IVGLHDSIS
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