| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_51353 |
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| Symbol | BRR2 |
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| ID | 4850829 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | + |
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| Start bp | 169603 |
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| End bp | 175980 |
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| Gene Length | 6378 bp |
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| Protein Length | 2111 aa |
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| Translation table | |
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| GC content | 40% |
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| IMG OID | 640392537 |
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| Product | RNA helicase-related protein required for pre-mRNA splicing |
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| Protein accession | XP_001387271 |
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| Protein GI | 126273607 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1204] Superfamily II helicase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAGGTT CGGGAGAGGC AAAGCTGAAC CAATACAGTT ACGATGAGAT GTCTAACAAA
GTGATTCGTA ACTCACACAG GCCGCGACAA GATGATGAAA AGTACAATCC ATCTTCATTG
ATTGGACACA TTTCCGTTCT GGAAATGGGG AGTCGAGTTT CAAAAGGTAG CAATAGCGAC
AGAGAAAAGA AATCAAGCTC GTTGGTGAAA AAGTCAGCAA ATTCTGGAGA ACCCAAATCC
ATTGCACAGT ATACTTCAGC ATATGAGAAC ATTTCGTATC AGCCTACGAA TGAAGAAACG
GGACACATAT TCGACCTCTT GATGGCGGAA GTGCGACAGG TCTTGCCTGA TTCAAACCAC
GAAGTCGTTC TATCAGCGTC TGACGCAATT TTGGAGATTT TGAAAGAAAA AGACCTGACT
GTAGGAGAGA AGAAGAAACA GATAATAGAG CTTATAGACT ATCAGATTTC TGACGTTCAA
TTGAACGAGT TGATAAACTT ATCGAACCGA ATTTATGACT ATGATATCGG CCATGTTGAT
TTAGAAAATA CTGCTAACGA TGAGTCTCCT GACGAGATCG TAGCGGTAGA GTTTGACATG
AGTGATGACG ATGGAGAAGT TGAAGAGGAC ATTCCTGAAG AAATAGAAAA TGATCACAAC
AATATAATAA ATAGAGAAGA GGAAGAGAAT GACTCTCAGG CATTAACCAA CGAAGTTATA
ATAGCCGAAT CTACAAAGAA GGAAGCAGAA GATTATACAC TTTCGATAAA AGATATCGAT
GAGTACTTCC TACAACGGAG AATACTGAAA TTATTCGACA GTGCAGATGC TGCCGAGAGT
CTGGAAAAGG CAAAGGAAGT CTATAAGATT ATGATTGACA AGGATGTGTC TGACCGAGAC
TTAGAGAACG AGATTATGGA GTTGATGGAT TATGACCATT TTGATTTCGT CAGACTTTGC
ATAGAAAACA GATGGAAGAT TGTATATAGA ATACAGCTAT TGCAAGCTGA AGACTCCGAT
GGAGAAAATA AGCTATTTGA GGAGATGAAA AAGCTTGGAT TATCTGACTT GGTAGCCGAA
TTTGTCGAAG GAACACAAAA GAAACGAAGG CTCTCTGAGG CTGAAGATCC GACAAAAGGT
AAAAAGATTA AAAGTGAAAA GAAAACAAGA GAACCAAAAA TTGTTGATTT GGATGCTCTT
TCATTTGACC AGGGTTCAAG GTTGATGACC AATACTTCAA TAAAATTACC CCAAGGATCG
TATCAACAGA ATAAGAAATC ATACAACCTG ATCTACATCC CACCACCTAA TCCTCCGCCT
CAGGAAGAAG GGGAGAAACT AGTCTCTATA GAAGACTTAC CACAATGGGC AAGAGTAGCA
TTCCCAACTA CAGAAACAAC CCATTTAAAC AGAGTACAAT CCAAAGTGTT TCCAGAAGCA
TTCCACTCGG ACAGAAACCT TCTACTTTGC GCTCCAACTG GTGCGGGTAA AACCAATGTA
GCCATGTTAT CTGTGCTCAG GACAATCAAC AACTATAGAA ACGCAGAAAC AGGAAAAATT
GACCTTAAAA ATTTCAAAAT AGTCTACATC GCACCATTGA AAGCTTTGGT TCAAGAACAA
ATGCGTGAAT TCCAAAGAAG ATTAACTTCC AATTTCAACC TTGTTGTCAA CGAATTGACA
GGTGACTCCA GCTTATCAGC TCGTCAGATC CATGAGACTC AGGTCATTGT CACGACTCCT
GAAAAGTGGG ATGTAGTAAC AAGAAAGAAT GATGTTCCCT ACGTTAAACT TGTCAGATTA
ATAATCATTG ATGAAATCCA TTTGTTGCAC GACGAAAGAG GGCCAGTTCT TGAGAACATT
CTAAGTAGAA CTTTGAGACA AGTAGAAGCT ACGGCTGAGC CTGTTAGACT TATTGGACTT
TCTGCTACCT TGCCTAACTA CAAAGATGTT GCACAATTCC TCAGGGTTGA TCTTCAAAAG
GGTTTGTTCT ACTTCGATGC TTCGTACCGT CCTTGTCCTT TAGAGCAACA GTTTATTGGT
ATCAAGGAAA AGAAGGCCAT CAAAAAATTA ACAGCCATGA ACGAAGCCTG TTACGACAAG
TTGCTTGAAT GCATAACAAA AAAACATCAA CTAATCATAT TTGTACACTC TAGAAAAGAT
ACTTTTAAGA CAGCCAAATG GCTCAAAGAC AAATTGGAAG AAGATGGAAA GTCGTGGAAT
ACTGAAGTTA GTACAGCAGA AATCTTGAAA CAAGAGGCCA ATGGTTTCAA GGATTTAAGT
TTGAAAGAAA TAGTGCCAGG AGGAATAGGA ATTCACCACG CTGGTTTGAT CAAAGGGGAA
AGGAGTGTGG TTGAAGATTT GTTTGCTCAG GGCCATCTTC AAGTTCTTGT TTCTACTGCT
ACGTTAGCGT GGGGTGTGAA TTTGCCTGCT CATACTGTTA TCATTAAGGG TACAGAAACT
TACTCCCCTG AAAGAGGAAC CTGGATTCAA TTATCACCTC AGGATATTTT GCAAATGTTG
GGTAGAGCTG GTAGACCTAG ATATGACAAA AGTGGAGAGG GTGTTATAAT TACGTCACAA
GATGATATCC AATACTACTT GGCCATCCTC AACCAGCAGT TGCCCATTGA GTCGCAACTA
ATGAGCAGAT TGCCTGATAG TGTAAATGCT GAGGTTGTTC TTGGTACCAT TAAATCAAGA
GAAGATGCTG TGAGCTGGCT AGGATACACC TATTTGTACA TTAGAATGTT GCAAACCCCA
GCATTGTATC ACGTCGGTGC TGATTATGGC GATGACAAGA TACTTTATGA GAGAAGGGTA
GATTTGGTAC ACAGTGCTTT GACTATTCTC CATGAAAGCA AGTTGATCAT TTACGATGAA
CTTAGTGGAA GCGTTAAGTC AACCGAGCTA GGGAGAATAT CATCGCACTT CTACATCAAC
TACGACACAA TTAAATTGTA CAACACTCAA TTGAAGTCGT GGTTTTCTGA AATCGAGATC
CTCAAAGTTT TCGCTTCTTC AGGAGAGTTC AAGTTCATTC CTTCAAGACA GGAAGAGAAA
TTGGAAGTGG CCAAGTTGAT GGAAAAATGT CCTATTCCTA TCAAAGAAAG ACCCAATGAG
CCACTTGCGA AAGTAAACAT ATTGTTGCAG ACTTACATTT CCAACTTGAA GTTGGATGGA
TTCGCGTTGA TGGCGGACAT GACATATATC TCCCAGAATG CAGGTCGTTT GCTAAGGGCA
ATGTATGAAA TCGCTTTGAA GAAAGGTTGG TCCTCGGTTT CGAAGACTCT TCTCAACTTT
TGCAAAATGG TATCCCGTCG AATGTGGACA GCCAATTCTC CATTCAGGCA ATTTGGAGCG
TTCGTTTCCA AAGATATTGT TAAAGCAACA GAAAGTTCAC ATTTACCTTG GCTAAGCTAC
TTTACTTTGG ATGCCGCTGA GCTTGCCGAA GCAATTAACT TTAAGGGTAA TAGTGGGAAG
GCATATCAGC TCTTGCAGAA ATTTCCTAAG CTCTCTCTAA GTTATTACTG TCAACCAATT
ACTTCAAGTT TGGTCAGAGT TCAAATCGAA GCCATCGCCA ACTGGGAATG GGACTATGAA
ATACATGGCA ATTCCGAGAG TTTCGTAGTC CTTGTTGAGG ATTGTGATGG CGAAAAGATC
CTTTACGCAG ACAAATTGGT TATCAACGAA AAGTATGCTG GCCGCGAACA TTTGATTGAC
TTTGTTGTGC CAATTTTGGA GCCTGATCAG CCGGCTTACT TCGTCAGCTT GATTAGCGAA
AAATGGATAC AAAGTGAATG GAAGATTCCT ATTGTTCTTT CAGATTTGAG ATTTCCGAAG
AAATTCCCTA GTTTGACGGA GCTGATAAAA TTGCAAAATG TTCCTACAAC ATCTTTGAGG
AATCCACAAT TTATCGAATC ATTTGAATTT TCTTATTTCA ATAAATTCCA ATCTCAGATT
TTCCCAAATT TATTTGGAAG TAATGAAAAT ATCTTCATTG GAATATCTAA AGGTGGTGGT
AAAACTGTTT GTGCCGAGCT TGCAATTTTG AACCATTGGA ATGAAGCTGG TGGCCGCATA
GTATACTTAA CACCAAATAA GAGCAAGATC GAAAAGCTTG CCAGGGTTTG GACTAAAAAG
TACAACAACT TAGAAAAGTC TGTTTCGAAA CTATCTGGTG AAGTTGCTAA GGATGTTTCT
GTTCTTGGAT CGAACCATTT AGTTCTTGCT ACTCCAGTAC AGTTCTATCG TCTTTCTAAT
CGTTGGAGAC AAAGAAAAGC AGTACAAGCA GTCGATTTGA TAATCGCTGA TGATCTTCAC
ACACTCGGTG CAAACCGAAA AGGGTCTATG TACGAAGTTG TCCTTGCAAG AATGAGATTC
ATTTCTGCTC AGAAGCAAAC GAACTTAAGA ATTGTAGCAC TTTCTTCTTC GGTTGCTAAT
GGTAGAGACA TTGGTGAATG GCTTGGATGT GCAAAGAATA ACATATTTAA TTTTGATCCG
AAGGAAAGGT TCAATGAAAT CAAGGAAATT GAATTACAAG CAAGCAGCGT TGAAAGAAAG
GATTTGGTAG TTTCTTCATT TTTAAACCAA ACATATGACT TTTTGAAACT TGACTCAGAA
GGAAAAAAAA TTGTCTTTGT GCCATCAAGA AAGCACTGTA TTGAAATTGC AATTGAATTT
GTACAGAGAG CTAGTCTTGA CAATTTGCAA TTGTTGAAAG TCGAAATCGA AGACTTGAAG
CCATATTTAA AGAGAGTAAC CGATGAAACT ATTAAAGAGA TGCTTTCATA TGGGGTTGGC
TGCTACTACG AAGGGATGAA TGCCACGGAT AAGGTGATTG TGGAAAAAAT GTTTGAGAAT
AATGTTCTCA GTATTCTTTT GGCCGCAAAA GAGACATCCT CATACGCCCC AGCTGCAGAT
GGCATAGTTG TTCTAAGCAC GCAGGAGTAC GATGGCAAGG AGCATCGTTA TATTGACTAT
TCTGTTAATG ACATATTGGA GATGGTAGGT TGTTGCAAGA ATGGTTTGAT CAATCAAGGA
AATGTATTGA TTCTCACCAA CGAATGTAAG TTGAAGTTCT ACAGCAAGTT TTTGAATGAG
CCAGCTCCTG TTGAAAGTTA TGTACCTACA ATGGTCCATG ACTTATTTCT CAGTGAGATC
AGTTGCAAAA CATTCACGTC CAAACAAGAT TGCATGGATT GGTTTACATT TACCTACTTT
TACCGTAGAT TGCAAATTAA TCCAAGTTTC TATGATGCAA AAGACACTTC TCAATTGGGC
ATCTCTGAAT TCCTTTCTGA AATGATTGAA TCTACACTTT CAGATTTGGA AGGTGCCAAA
TTGATTGAAT TTGAAGGTAA TGAAGGTGAT GAAGATGAAG AAGATGAAGA AGATGAAGAA
GATGAAGAAA CGATTGTTCC TTTGAATGGC GCTATGATAG CTGCTCATTA TAATGTCCTG
TTCAATTCTA TGAAGTTATT CGCTGGTCTT GACAACCGTG TGAAGTTGAA GGGTATTTTA
CAGGCCATCA CGTCCGCTGA AGAATTTGAG TTGATTCCTG TCAGATATAA TGAGGACAGT
ATTCTTTCCA GAATCTATAA CAAGGTGCCA TATAAGGTAG ATGATGAAAA TTATGAATCT
CCGTTCTTCA AAGCTTTTAT TCTCTTACAA GCGCACTTTT CCAGAATCCC ACTTCCAGTT
GATTTACAAA TCGATCAAAA GATTGTATTG AACACCATCT TGAACTTGCT ATATGCATGC
ATTGATACAC TTTCTAGTGA AGGTTACTTG AATGCTATCA ATGCTATGGA CTTGTCACAA
ATGGTGGTTC AAGCCGTATG GAACAATGAT AGTCCTTTGA AACAGGTTCC AAACTTCACC
AATGACATCC TCAAGAGATG TGCAACGTAT AAGGTTGAAA CAGTGTATGA TATCATGTCT
CTTGAAGATG ATGAAAGAGA CGACGTCTTG CGATTGGAGG GGGATAAACT CAACCGTGTG
GCTGAGTTTG TCAACAAGTA TCCTAACATA GACATGACCT ACGAGCTTGA TGTTAGTGAA
CCAATTGTCG CCAATGAGCC CAAGCTTATT ACCATTAAAC TTGAAAGAGA TGAGGAGTTG
GATGACCTAG ATGCAATTAC CGATTTCTAT CCTGGCACCA AGGCTGAAGG ATGGTGGGTC
GTTATAGGAG ATGCTGCTAC TAAGCAATTG TATGCGATCA AGAAGACGAC CATCAAGCAG
CAATCACAGC AATTGCAGTT GGAGTTCACC GTTCCTACTG CTGGCCACCA CGAGCTTACG
TTATGGTGTA TGTGTGATTC GTATGTTGAT GCTGATAAGG AGGTTGGATT TAGCGTAGAT
GTAGAACCAG AGGATTAG
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| Protein sequence | MSGSGEAKLN QYSYDEMSNK VIRNSHRPRQ DDEKYNPSSL IGHISVLEMG SRVSKGSNSD
REKKSSSLVK KSANSGEPKS IAQYTSAYEN ISYQPTNEET GHIFDLLMAE VRQVLPDSNH
EVVLSASDAI LEILKEKDLT VGEKKKQIIE LIDYQISDVQ LNELINLSNR IYDYDIGHVD
LENTANDESP DEIVAVEFDM SDDDGEVEED IPEEIENDHN NIINREEEEN DSQALTNEVI
IAESTKKEAE DYTLSIKDID EYFLQRRILK LFDSADAAES LEKAKEVYKI MIDKDVSDRD
LENEIMELMD YDHFDFVRLC IENRWKIVYR IQLLQAEDSD GENKLFEEMK KLGLSDLVAE
FVEGTQKKRR LSEAEDPTKG KKIKSEKKTR EPKIVDLDAL SFDQGSRLMT NTSIKLPQGS
YQQNKKSYNL IYIPPPNPPP QEEGEKLVSI EDLPQWARVA FPTTETTHLN RVQSKVFPEA
FHSDRNLLLC APTGAGKTNV AMLSVLRTIN NYRNAETGKI DLKNFKIVYI APLKALVQEQ
MREFQRRLTS NFNLVVNELT GDSSLSARQI HETQVIVTTP EKWDVVTRKN DVPYVKLVRL
IIIDEIHLLH DERGPVLENI LSRTLRQVEA TAEPVRLIGL SATLPNYKDV AQFLRVDLQK
GLFYFDASYR PCPLEQQFIG IKEKKAIKKL TAMNEACYDK LLECITKKHQ LIIFVHSRKD
TFKTAKWLKD KLEEDGKSWN TEVSTAEILK QEANGFKDLS LKEIVPGGIG IHHAGLIKGE
RSVVEDLFAQ GHLQVLVSTA TLAWGVNLPA HTVIIKGTET YSPERGTWIQ LSPQDILQML
GRAGRPRYDK SGEGVIITSQ DDIQYYLAIL NQQLPIESQL MSRLPDSVNA EVVLGTIKSR
EDAVSWLGYT YLYIRMLQTP ALYHVGADYG DDKILYERRV DLVHSALTIL HESKLIIYDE
LSGSVKSTEL GRISSHFYIN YDTIKLYNTQ LKSWFSEIEI LKVFASSGEF KFIPSRQEEK
LEVAKLMEKC PIPIKERPNE PLAKVNILLQ TYISNLKLDG FALMADMTYI SQNAGRLLRA
MYEIALKKGW SSVSKTLLNF CKMVSRRMWT ANSPFRQFGA FVSKDIVKAT ESSHLPWLSY
FTLDAAELAE AINFKGNSGK AYQLLQKFPK LSLSYYCQPI TSSLVRVQIE AIANWEWDYE
IHGNSESFVV LVEDCDGEKI LYADKLVINE KYAGREHLID FVVPILEPDQ PAYFVSLISE
KWIQSEWKIP IVLSDLRFPK KFPSLTELIK LQNVPTTSLR NPQFIESFEF SYFNKFQSQI
FPNLFGSNEN IFIGISKGGG KTVCAELAIL NHWNEAGGRI VYLTPNKSKI EKLARVWTKK
YNNLEKSVSK LSGEVAKDVS VLGSNHLVLA TPVQFYRLSN RWRQRKAVQA VDLIIADDLH
TLGANRKGSM YEVVLARMRF ISAQKQTNLR IVALSSSVAN GRDIGEWLGC AKNNIFNFDP
KERFNEIKEI ELQASSVERK DLVVSSFLNQ TYDFLKLDSE GKKIVFVPSR KHCIEIAIEF
VQRASLDNLQ LLKVEIEDLK PYLKRVTDET IKEMLSYGVG CYYEGMNATD KVIVEKMFEN
NVLSILLAAK ETSSYAPAAD GIVVLSTQEY DGKEHRYIDY SVNDILEMVG CCKNGLINQG
NVLILTNECK LKFYSKFLNE PAPVESYVPT MVHDLFLSEI SCKTFTSKQD CMDWFTFTYF
YRRLQINPSF YDAKDTSQLG ISEFLSEMIE STLSDLEGAK LIEFEEDEET IVPLNGAMIA
AHYNVLFNSM KLFAGLDNRV KLKGILQAIT SAEEFELIPV RYNEDSILSR IYNKVPYKVD
DENYESPFFK AFILLQAHFS RIPLPVDLQI DQKIVLNTIL NLLYACIDTL SSEGYLNAIN
AMDLSQMVVQ AVWNNDSPLK QVPNFTNDIL KRCATYKVET VYDIMSLEDD ERDDVLRLEG
DKLNRVAEFV NKYPNIDMTY ELDVSEPIVA NEPKLITIKL ERDEELDDLD AITDFYPGTK
AEGWWVVIGD AATKQLYAIK KTTIKQQSQQ LQLEFTVPTA GHHELTLWCM CDSYVDADKE
VGFSVDVEPE D
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