| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_40055 |
|---|
| Symbol | ATG1 |
|---|
| ID | 4851607 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009068 |
|---|
| Strand | - |
|---|
| Start bp | 2314183 |
|---|
| End bp | 2316684 |
|---|
| Gene Length | 2502 bp |
|---|
| Protein Length | 808 aa |
|---|
| Translation table | |
|---|
| GC content | 39% |
|---|
| IMG OID | 640393315 |
|---|
| Product | Serine/threonine-protein kinase ATG1 (Autophagy-related protein 1) |
|---|
| Protein accession | XP_001387015 |
|---|
| Protein GI | 126275020 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair
[R] General function prediction only
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0515] Serine/threonine protein kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.334682 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAACA TAGGAACTTA CACTATTGGA CCTGAAATAG GTAAGGGCTC CTTTGCTACT
GTCTATAAGT GTATTGACAA CAAGACGCAT AAGGCGGTTG CAATCAAATC AGTTGTTCGT
TCGAAGTTGA AGTCCAAGAA GCTCATAGAA AATTTGGAAA TCGAAATATC TATCTTAAAG
AGTATGAAAC ACCCTCATAT TGTTGGGCTA CTAGACTATA AGCAAACATC TTCCCATTTT
CACATTGTCA TGGACTACTG TTCTATGGGT GATCTTTCAT ACTTTATTAG AAAGAGAAAC
CAATTAATCA AGACTCATCC TGTTATTTCG TCACTTTTAG AGAGATATCC TTCTCCAGAG
GGTTCTCATG GTTTAAATGA AACCTTGGTA ATCCATTTTC TAAAACAATT ATCATCCGCT
CTCCAATTCT TGAGAGACAA AAGCTTGGTA CACAGAGACA TTAAACCACA AAATCTTTTG
TTGTGCCCCC CAATGCATTC AAAGCAGGAA TTTCAAGATG GAAACTATGT TGGTCTATGG
GAACTTCCAG TTTTGAAGAT AGCAGATTTT GGATTCGCTA GATTTTTGCC TTCTACTTCA
ATGGCAGAAA CATTATGTGG ATCTCCATTG TATATGGCAC CTGAAATCCT TAGGTACGAA
AAGTACAACG CCAAGGCAGA CTTGTGGTCC GTTGGAGCGG TTCTCTATGA GATGACTGTA
GGAAAACCTC CATTTAAGGC CGGCAATCAT ATTGAATTAT TGAAGAATAT CGAGAGGGCG
AACGACAGAA TCAAGTTTCC ATCCGCAGCA CAGGTGCCAG AAATTTTGAA AACTTTGATA
AGAGCTCTTT TGAAATATAA CCCAACTGAA AGGATATCTT TCAATGAGTT TTTTAATGAT
GCGATGATTA CATCCGATTT GTCGGGCAAC GATCAACCAT TAGAGACCTC TAGTATGGAC
GAAAACTTAT TTATCAGTGA GTACATTTCT CCAATTAATC CCTCACAAAG GTCGCAATAT
ATACAACCGA TTGCAGCGGC CATATCAAAG GCATCAGAAT CAATTACAAA TCCTGCAAGT
GACAAGAAAC GTGTTTCTTC ATCTTCTAGT TTTCAAAGAG ATGAGGAGAT AAAGCAAATT
ATCAATGAAA ATAGCCCGGG CCCGGAAGCA TTGTCACATT CTATTCAAGC CAATAACACG
GCGAGAAATG ATAAACTTCT TACGAGAAGA AACAACGACG ATTTTATTTT GGAGAAGGAC
TACGTAGTCG TCGAGAAAAG AGCAATCGAA GTAAATGCCA TAGCTGATGA ACTCGCCCAT
GCTGGAAGTG GAGCTGTTGC AATAAATCCT CGTAAGGGTG GTACCGCAAC GGCAGATCAC
AATAAGACCA GATACCGGAG AGCATCTCTG AATGGCAGCC AAAGAAGACC TAGCTTTGCA
GAAAGAAGAA TTTCTATTTC TATTTCTCCA CTTAGCAAGG CTATTGGCCT AGCTTCGAAC
AGATTATGGG GCGTTTCAAA TGTTGAATCT AGCAATATAT CTACGGGTAT CACCGCATCA
GACGATGCAG AGTACAGCTC AGCAAATGGA ACCTTTTCAA CTGTTATTTC AAGTCCCAAT
TTTGCGAACC ATCTTCTTTT GCAGAGGCTA AACTTACCTA CTTCAACGAC TGTTTCCAAT
GCAACGTTTG CTGTAAATGC TTCCGATCGC CAGAAATTAT CGGTTGACGA TGAAGTATTG
CGTAGACTAG AGTCCCTTGC AACAAAAGCA CACGCTGTTA ACTTGTTTGC GGATGTAAAA
TTTAGTCAGT TGATACCCAG TCCTCCTTCT TCTGATGGAT TGGATGATGA CCTCCTCCAT
CAGAATGATA TGCTACCACC AAAGATAATA AAATCAATTA GTGAAGAGGG AGTGGCATTG
TATGTGAAAA CGCTTTCTTT GTTGGCGAAG GGAATGGCCA TAGCTAGCGA ATGGTGGTAT
AGTCAGAATG AGCAGGGAGA CAGCACTGAA GAAAGCATTA GAAAGTCTTG TGATTTGCAA
ACTTCTGTTA GAATCAATGA ATTGGTACAA TGGATTAGGG AGAAATTTAA TGAGAGTTTA
GAAAAAGCTG AATTTATCAA GCTTAGGTTG GAAGAAGCCA ATACAACCAT ATTTAAGGAG
GAGGAGGATC AGAGTATGAC ACCGAATTGT TCCACAATTA CCAATGGAAA TATTGCTGGC
AGCAGGGTTA TTGCAGAGAA ATTAATTTTT GATCGAGCTT TGGAAATGTC CAGAAATGCA
GCCGTAAATG AGTTGGTGAA AGAGGATTTA AAAGGCTGTG AATTGGCATA TAGTACTGCA
ATTTGGATGT TAGAAGCATT ACTTGACGGA GAGCCAGGTT ATAACAATAC AGATGATACA
GAACAAAAGC TTGATAGCGA AGACAAAGCA ATGGTTGAAA AATTTATTGT CAGCATCGGA
AATAGATTGT CTGTATTAAA GAAGAAGTTG GATTTGATCT GA
|
|---|
| Protein sequence | MENIGTYTIG PEIGKGSFAT VYKCIDNKTH KAVAIKSVVR SKLKSKKLIE NLEIEISILK
SMKHPHIVGL LDYKQTSSHF HIVMDYCSMG DLSYFIRKRN QLIKTHPVIS SLLERYPSPE
GSHGLNETLV IHFLKQLSSA LQFLRDKSLV HRDIKPQNLL LCPPMHSKQE FQDGNYVGLW
ELPVLKIADF GFARFLPSTS MAETLCGSPL YMAPEILRYE KYNAKADLWS VGAVLYEMTV
GKPPFKAGNH IELLKNIERA NDRIKFPSAA QVPEILKTLI RALLKYNPTE RISFNEFFND
AMITSDLSGN DQPLETSSMD ENLFISEYIS PINPSQRSQY IQPIAAAISK ASESITNPAS
DKKRVSSSSS FQRDEEIKQI INENSPGPEA LSHSIQANNT ARNDKLLTRR NNDDFILEKD
YVVVEKRAIE VNAIADELAH AGSGAVAINP RKGGTATADH NKTRYRRASL NGSQRRPSFA
ERRISISISP LSKAIGLASN RLWGVSNVES SNISTGITAS DDAELNLPTS TTVSNATFAV
NASDRQKLSV DDEVLRRLES LATKAHAVNL FADVKFSQLI PSPPSSDGLD DDLLHQNDML
PPKIIKSISE EGVALYVKTL SLLAKGMAIA SEWWYSQNEQ GDSTEESIRK SCDLQTSVRI
NELVQWIREK FNESLEKAEF IKLRLEEANT TIFKEEEDQS MTPNCSTITN GNIAGSRVIA
EKLIFDRALE MSRNAAVNEL VKEDLKGCEL AYSTAIWMLE ALLDGEPGYN NTDDTEQKLD
SEDKAMVEKF IVSIGNRLSV LKKKLDLI
|
|---|
| |