| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_39416 |
|---|
| Symbol | QUP4 |
|---|
| ID | 4851856 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009068 |
|---|
| Strand | - |
|---|
| Start bp | 3018926 |
|---|
| End bp | 3020721 |
|---|
| Gene Length | 1796 bp |
|---|
| Protein Length | 581 aa |
|---|
| Translation table | |
|---|
| GC content | 40% |
|---|
| IMG OID | 640393564 |
|---|
| Product | Quinate permease (Quinate transporter) |
|---|
| Protein accession | XP_001387144 |
|---|
| Protein GI | 126275801 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR00879] MFS transporter, sugar porter (SP) family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.141327 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTATTG AAAAGCTCAA TAACGTTGTT GCAGTAAGCT CGCAAGTGGA AGAAAAGCAA
AAGGTGAAGT TCAGATGGAG AGTTGCAGAT GACCACTCAC CGAAAGAAAT CTATAACAAG
ACTCTTTTCC GTATGTACAT ATTTTCTTGA TGGCTTAGTT TCAGTACTAA CTGTTTGAAG
TTTCTGTCTT GGTTTTTGGT ATTCTTGGTG CTGCTAGAGG AACAGATGAA GGTACCGTAG
CTGGTGCCAT GCATCAGCCC TCTTTCAAGC ATCTCTTTGG TTTATCTGAT AAAAGCAAGT
CGGAACATGA AATTGCAGAC TTGAAGTCCA ATATTGCAGC AATGGTTCAG TTAGGTTCTG
TTGGAGGTGC CATTCTTGCA ATGTATACTG TTGATAAGTT AGGCAGAGTT AGAGCTGTGC
AACAAGTTTG CGTTATTTGG ATCATTGGTG CAATTATTCA AATGACTTCA AGAAATGTAG
GACAGTTATA TGCGGGTAGA TTAATCGAGG GTTTCGCTAT TGGACAGACT ACAACTATCG
GTCCAACATA TATGTCTGAA GTTGCTCCAC CAGCATACAG AGGTCTCTTT GGTTGTTTGT
TCAGTGGTGC TGTGTACTTG GGTATTTTCC TTTCCTATTC CGTCAATTAT GCTACAGCAA
AACATATGTC AGGTTCTACT AACAGTCAGT GGATGATCCC TCTTTGTCTT AAATTCATCT
TTTCCGGTTT TGTTTTCATT GGTTCGCTTT TCTCGTATGA GAGTCCTAGA TGGTTACTTA
AAGTTGGAAA GAATGACAGA GCTTTGAAGA GTTTGTGCAA ACTCAGACAG TTGCCACCTG
ACCACCCATA CATTGTTGGA GAAATTAATG ATATTAATGA ACAAGTATTC GCCGAAAGAG
AAGCAACTTC CAATTATTCT GTGTGGCAAA AATTCAGGGA CTTAGTTACA GTTAAGTCTA
TCAGCTACCG TTTCTTCGTC ATTGGTTTCA TGTCTCAATT GCTTGGACAA TGGAGTGGAG
CTAATGCCAT TACGATTTAT GCTGGTGACC TCTTTAGTTA TGCTGGAATC AAAGGTGTTG
AGGTTATGAA GATGACTGTT ATCTTAGGTG TTATCAAGTT CTGTTCGGCT TACTTCAGTG
CTTTTTTCAT CATCGATTTC TTAGGTCGTA GAAAGGCACT TTACATTGGT ATTACCATTC
AAATGATTTC CATTTTGTTC TTTGCAATTT TTTTGCAGAT CGTTCCCCAT GCGACGGAAG
AAGGTTGGAC CTTATCTCCT TCTGAAAAAG CTGCTAGTAA AGCAGCAATG GCAGCCTTAT
ATATTTCCGG TATTGGTTGG ACCATGGGTT TCAACAGTGT TCAATATTTG CTTGGTTCGG
AAATTTTCCC ATTGAAGCTT CGTTCTTTCG GTCAATCTCT CATCATGGTG TTCCATTTTG
CTAACCAATA TGGTAACTCC AAAGCTGTAC CAAAAATGTT GATCAGTCTT AAGAAGTATG
GGGCTTTCTA CTTTTTCACT GTTGTATGTG CAATGTCATT ATTCTGGTCT TGGTTTTTCA
TTCCTGAAAT TTCGGGTAGA TCCCTTGAAA GTATGGAAGA AGTTTTCAAC TTACCATGGT
ACTTGGTTGG TAGAAAGGGT GCTATCTTGT GTCCTGACAC TTCCGCAGTT GGTAAGATTA
CACACCTCGC AGACCGTGGA AGTGTTGAAA TCCTTGAAGA CCTCGAAAGG CAGAAAGGCG
AAGAGGAGTT ATTGGAGAAC GCTAGTGATG AAGACAAGAA CAACAAGTAC AAATAG
|
|---|
| Protein sequence | MSIEKLNNVV AVSSQVEEKQ KVKFRWRVAD DHSPKEIYNK TLFLSVLVFG ILGAARGTDE
GTVAGAMHQP SFKHLFGLSD KSKSEHEIAD LKSNIAAMVQ LGSVGGAILA MYTVDKLGRV
RAVQQVCVIW IIGAIIQMTS RNVGQLYAGR LIEGFAIGQT TTIGPTYMSE VAPPAYRGLF
GCLFSGAVYL GIFLSYSVNY ATAKHMSGST NSQWMIPLCL KFIFSGFVFI GSLFSYESPR
WLLKVGKNDR ALKSLCKLRQ LPPDHPYIVG EINDINEQVF AEREATSNYS VWQKFRDLVT
VKSISYRFFV IGFMSQLLGQ WSGANAITIY AGDLFSYAGI KGVEVMKMTV ILGVIKFCSA
YFSAFFIIDF LGRRKALYIG ITIQMISILF FAIFLQIVPH ATEEGWTLSP SEKAASKAAM
AALYISGIGW TMGFNSVQYL LGSEIFPLKL RSFGQSLIMV FHFANQYGNS KAVPKMLISL
KKYGAFYFFT VVCAMSLFWS WFFIPEISGR SLESMEEVFN LPWYLVGRKG AILCPDTSAV
GKITHLADRG SVEILEDLER QKGEEELLEN ASDEDKNNKY K
|
|---|
| |