| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_39042 |
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| Symbol | UGA4 |
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| ID | 4851142 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | - |
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| Start bp | 1033567 |
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| End bp | 1035279 |
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| Gene Length | 1713 bp |
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| Protein Length | 570 aa |
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| Translation table | |
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| GC content | 44% |
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| IMG OID | 640392850 |
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| Product | GABA-specific high-affinity permease |
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| Protein accession | XP_001387842 |
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| Protein GI | 126274128 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0531] Amino acid transporters |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.108543 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTCTCC ATCCAGTTCT CTCCAGAGAG CAGATTCTTG AGCAGGTTGT CTCTAACAAG
GCCTACTACA ACAATACCCA GAATGTTGAA GATCCAAAGA TTGAAGCCAT CTTCTCCAAC
TCAGATGAAC AGTTGTTGGC ACAGATTGGG TATAAACCGG AATTGAAAAG ACATTTTCTG
ACACTCCAGG CGTTTGGGGT TGCCTTTTCC ATCATGGGAT TGTTACCATC TATTGCTTCT
ATCTTGGCCC AGGGATTGGT AGCCGGTCCT GCTGGATGTT TGTGGGGATG GGTAATTTCA
TCCATTCTCA TCTTGACTAT TGCAATTTCG ATGTCTGAAA ACGGTCTGAG TATTCCCACT
TCTGGTGGTT TATACTACTG GACAAATTAC TACGCCCCTC CTCGTTTTAA GACTATTTTC
TCATACCTTA TCGGCAACAC CAACTCCATT GCCTTGATCG GTGCCTTGTG CTCTGTAGAT
TACGGATTCG CAGTGGAAGT ATTGTCTGTT GTAGTCATTG CCAAAGATGG AGACTTTGAA
ATAACGCCAG CAAAGACTTA CGGTATCTTC GTAGCCTGTG TCTTGCTACA CATCGCCATC
ACCTGCTTTT CTTCCAAAAA CTGTGCTTAT CTCCAGACTA CGTCTATCGT GGTAAATCTT
GCTATCATTG TATTATACAT TATTGCGTTA CCAATTGGAG CAAAAGGGAA CTTCAAGCCT
GCCAAGTTTG TCTTTGGGGA GTTTGATAAT ATTTCCAATT GGCCCATCGG CTGGACCCAA
CTTAGTGCAG CTTGGCTACC AGCAATCTGG ACCATTGGAG CCTTTGACTC CGTCATCCAC
ATGAGTGAGG AAGTTAAAGA CGCAGAACAT ACCATCCCAA TCGGAATATT GGGCTCCGTT
ATCGCCTGTG GTTCTATCGG TACTGTGATC TTGATTATTA CTTTCTTCTG TATCCAAACC
AACGATATTG AAACTGATAT CTTGGGCTCC AAATTCGGTC AACCATTGGC TCAGATCATC
TTTGATGTCT TAGGTAAGAA GTGGGCTTTG ACATTTATGG TTCTTATTGC TTTTGCCCAA
TTCTTGATGG GTGCCTCGAT CTTAACCGCC ATTTCTCGTC AAATCTGGGC TTTTGCCAGA
GACAATGGCT TGCCATTCTC TCGTATAATC AAGAAGGTCA ACAAGAAGTT GTCCGTGCCT
ATCAACGCTG TATGGTTCGG TGGTATTATG TCCATTATCA TCGGGTTATT AGTGTTGATT
GGAACTGTCG CTGCCAATGC ACTCTTCACA TTGTACATTG CTGGTAACTA CGTAGCGTGG
GGAACTCCAA CTTTCTTGAG ATTAACCACT GGCAGAAAGA AATTCAAGCC AGGAAAGTTC
TGGTTGGGCC CAGTGTTCTC ACCCTTGATC GGGTGGACCT CCACCATCTT CATTGTCTTT
ACTTTCTTCA TGGTGATGTT CCCAGCTAAC ACCAACCCAG ACAAAGATAG CATGAATTAT
ACCTGTGTGA TCACACCCAG TGTGTGGATC TTTTCTTTGA TATACTATTA CGTCTATGCC
CACAAGATTT ACCATGGTCC TTGTAAGACT ATTGATGATG TGGATGAAAC TTCTCTGGAA
GCTGGAATAG ATGCTGTCAT AGATGGAGTT GATCCTCAGG GAGACAGCGA TAAGGTATCT
CAGACTAATG TCAATGTTTT GGAGAAGGTC TAA
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| Protein sequence | MVLHPVLSRE QILEQVVSNK AYYNNTQNVE DPKIEAIFSN SDEQLLAQIG YKPELKRHFL
TLQAFGVAFS IMGLLPSIAS ILAQGLVAGP AGCLWGWVIS SILILTIAIS MSENGLSIPT
SGGLYYWTNY YAPPRFKTIF SYLIGNTNSI ALIGALCSVD YGFAVEVLSV VVIAKDGDFE
ITPAKTYGIF VACVLLHIAI TCFSSKNCAY LQTTSIVVNL AIIVLYIIAL PIGAKGNFKP
AKFVFGEFDN ISNWPIGWTQ LSAAWLPAIW TIGAFDSVIH MSEEVKDAEH TIPIGILGSV
IACGSIGTVI LIITFFCIQT NDIETDILGS KFGQPLAQII FDVLGKKWAL TFMVLIAFAQ
FLMGASILTA ISRQIWAFAR DNGLPFSRII KKVNKKLSVP INAVWFGGIM SIIIGLLVLI
GTVAANALFT LYIAGNYVAW GTPTFLRLTT GRKKFKPGKF WLGPVFSPLI GWTSTIFIVF
TFFMVMFPAN TNPDKDSMNY TCVITPSVWI FSLIYYYVYA HKIYHGPCKT IDDVDETSLE
AGIDAVIDGV DPQGDSDKVS QTNVNVLEKV
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