| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_38981 |
|---|
| Symbol | HXT2.2 |
|---|
| ID | 4851005 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009068 |
|---|
| Strand | + |
|---|
| Start bp | 692665 |
|---|
| End bp | 694287 |
|---|
| Gene Length | 1623 bp |
|---|
| Protein Length | 540 aa |
|---|
| Translation table | |
|---|
| GC content | 38% |
|---|
| IMG OID | 640392713 |
|---|
| Product | Predicted transporter (major facilitator superfamily) |
|---|
| Protein accession | XP_001387362 |
|---|
| Protein GI | 126273966 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00879] MFS transporter, sugar porter (SP) family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0971418 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTAAGA ATCAAACAAT CAAAGACCAG ATAATTTCCA TTTCTGTTTC AGATGGCGTC
GAATATGACG CTCAACAAGA GCATGAAATT GATCAGTATC TTTATCAAAA GAATTCTTGG
TGGACTTATC CACACTTAAG AAAGTTACAT CTTTTTGTAT TTTTATGCAC CCTAGCTACT
ACAACTAACG GTTATGACGG TTCCATGTTG AACGGTTTGC AAGTACTTCC AGCTTGGCAG
GAAGCTATGG GTCACCCAGA AGGCTACAAG CTTGGTTCTC TTGCCAATGG TACACTTTTT
GGTTCTGTTC TTTGTATCTT TGTTGGAGCT TGGATATGTG ACAAGATCGG TAGAAGAAAT
ACAATCACTG CTGGTTCTGG AATTGCGGTT GTGGGTGCTG TTTTGCAAGG AGCCTCTACT
AATTTTGCAT TCTTTTTGAG TTCTAGAATT TTAATTGGTT TCGGTGGTGG TCTTTGTGCC
ATTGCTGCTC CAGCATTGAT TGCTGAAATT TCTTATCCAA CTTTTAGACC AACTTGTACT
GCCATTTACA ACACCTTCTG GTATTTTGGT GCAGTCATTG CTGCTTGGGT CACTTTTGGT
ACTCAAAACT TGAATGGTGG GGCAAGTTGG AGAATTCCTT CTTATCTCCA AGCGGCATTA
CCAGCTGTAC AATTTCTCAC TATTTGGTAC TTTCCCGAAT CACCAAGGTG GATGATTGCT
AAAGGAAGAG AAGAACAAGC CAGGAAATTC TTTTTTGAAT ATCACACTGG GGGTGACCAA
GATGAAAGAT CTGTTAAATT GGTAGAATTT GAAATAAAAG AAATCCAAGC TGCTTTGGAG
ATGGAAAAGA TTTGCTCAAA CTCGAAATAC ACTGACTTCT TAACCATTCC ATCTTACAGA
AAGAGATTAT TCTTGATTTC TTTTACTGCT TGTATTATGC AGTTATCTGG GAATGGTTTA
GTTTCCTATT ATCTTGGAAA AGTCTTGACT TCAATCGGAA TTGAATCTTC AAACGAGCAG
CTAATTATCA ACGGTTGTCT TATGATATAT AACAATGTTA TTGCTTTGTC CGTTGCTTTT
GTTGTCTACT TATTTAGAAG ACGAACTTTG TTCTTAACAT CTATATCAGG TATGCTTGTC
AGTTACATTG TGTGGACAGC TTTATCTGCA AAAAATCAAC AAAGGAACTT TGAGGACAAG
TCATTAGGAA GGGGTGTTCT TGCAATGATC TTCTTATATT ATTTTTTCTA TGATATTGGT
GCTAACGGTT TACCATTTTT GTATGTTACT GAAGTTTTAC CTTATACTCA CAGAGCAAAG
GGTCTAAACG TAATGTACGG TGTCCAGATG GTAACTTCAG TTTACAATGG TTACGTCAAT
CCTATTGCCA TGGATGCACT TGACTGGAAG TACTACATTG TTTGGTGTTG TTTCTTGACG
TTTGAGTTGG TCATTGTCTA TCTTTTCTTT GTGGAAACTT ACGGTTACTC TTTGGAAGAA
GTTGCAAAGG TTTTCGGTGA CGATGCACAC TCGCCTCTCA TTTCCTTAGA TACTGGCAAT
GGCAAAACTT CCATCGAACA TTTGGAACAA ATTTCTTCTG TTGAAGTCGG AAAAAGTGTT
TGA
|
|---|
| Protein sequence | MSKNQTIKDQ IISISVSDGV EYDAQQEHEI DQYLYQKNSW WTYPHLRKLH LFVFLCTLAT
TTNGYDGSML NGLQVLPAWQ EAMGHPEGYK LGSLANGTLF GSVLCIFVGA WICDKIGRRN
TITAGSGIAV VGAVLQGAST NFAFFLSSRI LIGFGGGLCA IAAPALIAEI SYPTFRPTCT
AIYNTFWYFG AVIAAWVTFG TQNLNGGASW RIPSYLQAAL PAVQFLTIWY FPESPRWMIA
KGREEQARKF FFEYHTGGDQ DERSVKLVEF EIKEIQAALE MEKICSNSKY TDFLTIPSYR
KRLFLISFTA CIMQLSGNGL VSYYLGKVLT SIGIESSNEQ LIINGCLMIY NNVIALSVAF
VVYLFRRRTL FLTSISGMLV SYIVWTALSA KNQQRNFEDK SLGRGVLAMI FLYYFFYDIG
ANGLPFLYVT EVLPYTHRAK GLNVMYGVQM VTSVYNGYVN PIAMDALDWK YYIVWCCFLT
FELVIVYLFF VETYGYSLEE VAKVFGDDAH SPLISLDTGN GKTSIEHLEQ ISSVEVGKSV
|
|---|
| |