| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_37780 |
|---|
| Symbol | TMP1 |
|---|
| ID | 4851240 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009068 |
|---|
| Strand | - |
|---|
| Start bp | 1292240 |
|---|
| End bp | 1293190 |
|---|
| Gene Length | 951 bp |
|---|
| Protein Length | 316 aa |
|---|
| Translation table | |
|---|
| GC content | 45% |
|---|
| IMG OID | 640392948 |
|---|
| Product | Thymidylate synthase |
|---|
| Protein accession | XP_001387889 |
|---|
| Protein GI | 126274226 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0207] Thymidylate synthase |
|---|
| TIGRFAM ID | [TIGR03284] thymidylate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0107754 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGTCT TGCCAAATAC TGCCGAACAG GCGTATCTCG ATCTCTGTGA AAAGATCATC
AACGAAGGAG AGTTCCGTCC CGATCGAACT GGAACAGGCA CCAAATCACT TTTCGCACCT
CCACAGTTAA GATTCGATTT GTCCAACGAT ACCTTCCCAC TTCTCACCAC CAAAAAGGTG
TTTTCGCGTG GGATCATCCA TGAGCTCTTG TGGTTTGTAG CCGGATCTAC GGATGCCAAG
TTGCTCAGTG AAAAAGGCGT CAAGATCTGG GAAGGCAATG GATCCCGTGA GTTCTTGGAC
AACTTGGGGT TGACTCATAG AAGAGAAGGC GACTTGGGTC CCGTGTATGG ATTCCAATGG
AGACACTTTG GAGCAGAGTA CAAAGACTGC GATGCCGACT ACACTGGCCA AGGCTACGAC
CAACTTGCTG ATGTCATCAA AAAGTTGAAG ACAAACCCCT ACGACAGAAG AATCATAATG
TCAGCCTGGA ACCCACCAGA CTTTGCCAAA ATGGCTCTTC CTCCATGTCA CGTTTTCTGT
CAATTCTTCG TCAGCTTTCC TTCTACCAAT CCAGAATCTA ACACTAGTAA ACAGGCTAAA
GCAGAAACCA GACCCAAGTT GAGCTGTTTG TTGTATCAAA GATCATGTGA CATGGGCTTG
GGTGTTCCGT TCAACATCGC TTCTTATGCT CTTTTGACGA AGATGATTGC CCATATTGTT
GATATGGACT GCGGTGAGTT CATACACACT TTGGGTGATG CTCATGTATA CTTGGACCAC
ATAGATGCAA TCAAGGAACA GTTAACGAGA ACCCCTAAGG ACTTCCCTAA GTTGTTGATA
AAAGAAGAAA GAAAGGACAA AATCACATCC ATAGACGACT TTAGGTTCGA AGACTTTGAG
ATCGTTGGCT ACGAGCCTTA TCCTCCCATC AAGATGAAAA TGAGTGTCTA A
|
|---|
| Protein sequence | MTVLPNTAEQ AYLDLCEKII NEGEFRPDRT GTGTKSLFAP PQLRFDLSND TFPLLTTKKV
FSRGIIHELL WFVAGSTDAK LLSEKGVKIW EGNGSREFLD NLGLTHRREG DLGPVYGFQW
RHFGAEYKDC DADYTGQGYD QLADVIKKLK TNPYDRRIIM SAWNPPDFAK MALPPCHVFC
QFFVSFPSTN PESNTSKQAK AETRPKLSCL LYQRSCDMGL GVPFNIASYA LLTKMIAHIV
DMDCGEFIHT LGDAHVYLDH IDAIKEQLTR TPKDFPKLLI KEERKDKITS IDDFRFEDFE
IVGYEPYPPI KMKMSV
|
|---|
| |