| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_37673 |
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| Symbol | MSC2 |
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| ID | 4850842 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | - |
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| Start bp | 201848 |
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| End bp | 203743 |
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| Gene Length | 1896 bp |
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| Protein Length | 631 aa |
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| Translation table | |
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| GC content | 44% |
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| IMG OID | 640392550 |
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| Product | Meiotic Sister-Chromatid recombination transmembrane protein (putative) showing some protein similarity to Zrc1p and Cot1p |
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| Protein accession | XP_001387692 |
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| Protein GI | 126273667 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1230] Co/Zn/Cd efflux system component |
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| TIGRFAM ID | [TIGR01297] cation diffusion facilitator family transporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.426608 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | CTCATAGATG CGTTGCCAGT TCTCGCTGCT TTTCCGGCCA TATTGCTTCT GGCAGATCTT
GCCTACGTGC CGCATTCGTA TGAGTCAGTA TCGTCCTATG TGTTTGCCTT ACTAGTTCTG
TCATTGCTAG CATGTTCTTC GTTGCTAATG TTGAGTTTGC TTGTAAAATT CAATGTAGTG
GCCCTAAAAA GAGAAATATC TACTTCGGGT TCGTCTCAGG GACTTCAGTC AGCAATTCTT
TTGGCGGTGG GCATCTCTTT CTCGTATCTT GCTACCAATT TCTTGCCCAT CTCGCGTGTT
TCTGTGCTCT ATCTAGGCTT GTATTTGCAC AGGTTCAACT TTTGCACACC CATTTTCTTC
TTTGTCGACA TCTACAAGGC CTACACTACC CATAGCTATG TTTCCATATT CAATATCTGC
TTGGGCTATG TGTTGGTGCT GGTATCGTTT CAGATCTTGT TCAAGAAGTT CGTAGCCAGC
TCGGTGTCCA ACACTGTGAG AAACATTAGA ATGAACATCT TTCTACCTGT CACCATTGCA
CTTGGGTTAT GTCTTCTTTT TGCAGACGCG TCTACGATTA GTCCCAGTAT AATTGGAGTC
AATATCGCTG CCAGTGTAGT GTTCATCATC TCGTTGCAAG AGATTGATCT CAAGAGCTCC
AAATTCATAC CGTCGATCTT ATCGAGCATA GCTTGTGCCC TCGAATTCGT AGTGGCTTCC
AAGTCTCTTT CCATAGACTC GCTCATTACA ATCTTTCTTC CATTTATCAT AGTTCCAGAT
AGAAGTTACG ACATTGCTAA CGCGTACACG ATGATGAGCA GGTCAACGTC GGCTACTGAA
AATATGACTC CCATCTTGAC TGAGTTGCTT AGCCACTCAG ACACAAGGGC CATTTTCAAC
TTTCTTCTCT TGAACGCTAC TTTCATGTTT GTGCAACTCT TGCACTCGTT CAGATCAAAG
TCTTTAGGTT TGCTCTCAGA TTCGTTGCAT ATGGCTCTCG ATTGTATGTC GCTTGCACTT
GGTTTGATTG CCGGTGCACT TTCGAAAAAA GAGATCAATC CCCACGGAAA GTACCCCTTT
GGCTTGAAGA ACTTTGAGAT CTTGGCTGGG TTCACTAACG GTACATTGTT GATAGGAATC
AGTGGAGGTA TCATTTTTGA GGCCATTGGA CGTTTGGTTA ATCCTGTTGT TCTTGAGAAA
ACGACAGAGT TAATCATAGT CTCTCTTTTA GGGCTAGGGG TCAATCTTGT AGGTATATTT
GCCTTCAACC ATGGACATGC CCATGGACAT TCACATGGAC ACTCGCACTC TCATGGGCAT
AATCACGAAC ACGAGTCTGG TCATTCTCAC AACCATGAGC ATAGCCATGG TGAAGAGCAC
GAAGATTGTA AAGAAGAAGG TGGTATGAAC GACAACATGA AGGGCATTTT CCTTCACATT
TTGGCAGACA CTTTAGGCTC AGTTGGAGTT GTAGTTTCTA CGATTTTGAC CAAGTATGTA
AAATGGAACG GATTTGACCC CATAGCGTCG ATGATTATAG CTACATTGAT TTTGTTATCT
GCTATTCCAT TGATCCAGTC TACAGCCTCC TCGTTACTAT TGAGGTTAAC AAAAAAGAAA
GAGACAAAAG TTCGCAATGC CTTGAACGAC ATCACCAATA TCAAGGGCAT CAAGTCATTT
ACAACGCCGC GGTTCTGGCC CAACTCCAGC AACACCATCA ACGGCTACAT CCATATACAA
GTCTACCGTG GAGAGAATGC TTCCTATATT AAGAGACAAT GCGAACGGGT CTTCGAGACA
GAAAAAATCG ATGTCATGAT CCAGGTCGAA AACGACTACG ATTCGTGTTG GTGTCGCTCA
GGTAGCGAGA TTACAGCACA GTCGAACTGG TCATGA
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| Protein sequence | LIDALPVLAA FPAILLLADL AYVPHSYESV SSYVFALLVL SLLACSSLLM LSLLVKFNVV
ALKREISTSG SSQGLQSAIL LAVGISFSYL ATNFLPISRV SVLYLGLYLH RFNFCTPIFF
FVDIYKAYTT HSYVSIFNIC LGYVLVLVSF QILFKKFVAS SVSNTVRNIR MNIFLPVTIA
LGLCLLFADA STISPSIIGV NIAASVVFII SLQEIDLKSS KFIPSILSSI ACALEFVVAS
KSLSIDSLIT IFLPFIIVPD RSYDIANAYT MMSRSTSATE NMTPILTELL SHSDTRAIFN
FLLLNATFMF VQLLHSFRSK SLGLLSDSLH MALDCMSLAL GLIAGALSKK EINPHGKYPF
GLKNFEILAG FTNGTLLIGI SGGIIFEAIG RLVNPVVLEK TTELIIVSLL GLGVNLVGIF
AFNHGHAHGH SHGHSHSHGH NHEHESGHSH NHEHSHGEEH EDCKEEGGMN DNMKGIFLHI
LADTLGSVGV VVSTILTKYV KWNGFDPIAS MIIATLILLS AIPLIQSTAS SLLLRLTKKK
ETKVRNALND ITNIKGIKSF TTPRFWPNSS NTINGYIHIQ VYRGENASYI KRQCERVFET
EKIDVMIQVE NDYDSCWCRS GSEITAQSNW S
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