| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_34721 |
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| Symbol | TRS31 |
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| ID | 4851994 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | + |
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| Start bp | 3378598 |
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| End bp | 3379341 |
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| Gene Length | 744 bp |
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| Protein Length | 247 aa |
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| Translation table | |
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| GC content | 44% |
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| IMG OID | 640393702 |
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| Product | Transport protein particle (TRAPP) complex subunit |
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| Protein accession | XP_001386971 |
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| Protein GI | 126276249 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5128] Transport protein particle (TRAPP) complex subunit |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.367897 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCTGACG ATATAATTCT TCCATCGGCC ACATCTATGT CTACACTTAC AATTTCCGAC
GTTTCTCGCA CCGGATTTGG ATACAATCCT TCTGTTGGGA CAGCATCCAA TTCGATAACG
TCAGAGACTT CCAACATTCT TCTCAACAGA AAGACCATCA GTCTTACACC GACTTCGGCG
AATTCCATAT ATGATAAGAA CGTCAGCAGC AAGAAAATCA CCGAGATCAG TCTCTCATCG
CTCTCATTTC TTTTTTGTGA AATTGTCAAC TGGTCTCACA AGAACTCAAA AGGTATCCAG
GACCTAGAAA CCAGATTAAA TGGACTAGGC TATCAAATTG GACAACGTTT CCTAGAGTTG
ACCAAATTGC GCGAAGGTTT CAAAAATAGC AAACGTGAAA TACGAATCAT CGAGGTACTC
CAGTTCATCC ACGGTAGTTT CTGGAAATCC ATTTTCGGTC GTGCTGCCAA CGATCTAGAG
AAGTCACAAG ATGTTTCCAA CGAATACATG ATCATAGACA ATGCTCCGCT TGTATCGAGG
TTTATCAGCA TACCGAAGGA CTACGGCAAT TTGAACTGCT CGGCATTTAT GGCCGGAATA
ATTGAGGGAG CGTTGGACTC AGCCAGCTTC CAGGCTGATG TCACAGCCCA TTCTGTTCCG
GTGGATGGAT ATCCACTGAG AACAGTTTTC CTAATCAAGT TCCACGAGCT GTTGATGGTG
CGCGAGAGTT TAAGATTCGG TTAA
|
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| Protein sequence | MSDDIILPSA TSMSTLTISD VSRTGFGYNP SVGTASNSIT SETSNILLNR KTISLTPTSA
NSIYDKNVSS KKITEISLSS LSFLFCEIVN WSHKNSKGIQ DLETRLNGLG YQIGQRFLEL
TKLREGFKNS KREIRIIEVL QFIHGSFWKS IFGRAANDLE KSQDVSNEYM IIDNAPLVSR
FISIPKDYGN LNCSAFMAGI IEGALDSASF QADVTAHSVP VDGYPLRTVF LIKFHELLMV
RESLRFG
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