| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_29233 |
|---|
| Symbol | |
|---|
| ID | 4851961 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009068 |
|---|
| Strand | - |
|---|
| Start bp | 3306489 |
|---|
| End bp | 3308411 |
|---|
| Gene Length | 1923 bp |
|---|
| Protein Length | 640 aa |
|---|
| Translation table | |
|---|
| GC content | 37% |
|---|
| IMG OID | 640393669 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001387202 |
|---|
| Protein GI | 126276149 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.116558 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAAAG AAGACTTGGA GAGTGAAGTA GTTGAAAAAA ACACCTACTG CTTCGAAGAT
AATGAATACT GCAAATTAGC TTTAGATGAC TCTAATCAGC TTTTACCTTA CAAAGAAAAG
ATTTCTAAGA AGTGGGTCCT CACTGTCATC TTTAGTATTA TTCTATCATT GTTTTCGTTT
TGCTTATATT TGTTTGTTAG ATACAGCTAT TCAAACGATT CCGTCAAATC CTTTGGACAT
AATGTAGATG AATGGGTGAC AATGACTGCA ATTGATGGTG AACCTATGCA AGTAATCGAA
AACAATTTTG AAAGGATTCC TTTGGAGGCA AAAGTCATGA ATACTACGGT CTACGAGAAA
CAGAAATTAG TAAATGGTTT GAGTGCTACT TTCTCCAAGT TTGAAGACTT CGAATTTGAC
TCTGTTTTTT TGACATTGAA CTTCACCAAC AATGATAACG ATACCGAAAA TGTCAATGTA
ATTGAGATCT CCATCGATGG TCATCCAGTA TGGAGAACTT CCCCACCACT TTCTAAGGTA
GGCACCACAA CCTACTCAAG CACCAGTAAA GACATTTCCA AGTACATTTC ACTCTTTGGT
AAAAGTTCCA ACCAATTCAA AGTGCAAATC TTGGAAGGGA GTCATGACAA AATCAGCTTT
GCTCTTGCTC TTACATTAGC GAACTGCGGA AAAGAAAAGC CTGTTATAGG TTCTCCAATC
ACAGTGAGTT CGCTTTTCAA TTCAACTGAG CCTGCAAACG ATATAATAGC ATTGACCAAA
TCAAATGGAG AAGTGTTTGA CTTCTCGAAG AACGACAAGT TCTTAGTTGA ATTACCAAAG
TTCAGTGGAA AGACATTTGC TGCAAAGCTA GAATTATTTG TCTCTGCTGG AAAGTCTGAC
GTTGAATTTT TCATTCTTAA TAGAAATTCT CCGTTTCGTC TTTTGAACAT TTTCATTAAT
GAACAACTAA TTGCTACTAT CTCACCAAAC CCTATTTTGT TTCACTCGAA CTCTATCATT
CCCAGCGCGT ACTCTGGGCC TATTGCTCCT TTTGGTAGTT TTACCGGATT TAGCTATGAA
GTAAATTTGG CCAACGTTTT GCCAATTTTG TGGGGTCAGA AATCCACCTT AGAAGTTCAA
CTTGTTTCTC CTGTCAACGA TATGTTCCCC TTGGAGATTG AAAACGTATT TTCCCAAAAG
GATAATTATG GTGTCAACGA TTTTAGATTT TCATCCCCTG CAAAGCCAAT AATGAAGGGC
GACAATCAAG CCAATACAGA ATGGTACGTG TCTGGCAATA TCTTTCTGTG GGAAAACAAA
GACATTTTGA CTTCTCAAGG TGAGATATTA GGGTCTGGAA TAACCGAAAC TTATAGTAGT
AGTTTACGAT ATGACCCTCG CAAAATTGCT ACTAAAATTT TAACTGTTTC AGACGATTTT
TATTCTTCCC ATTCGTCGAC TCTTCGATTT TCTTTAAGGA ACCAAACTCT GTTAAACTTC
ACTGTAAATC AAAAGGGTTC TACTAAGAGT TATTTAACTG AGCACCAGAT TAATGGCAAA
ATTTCACTTG ATGTCGTTGG TCACAAACTG AGTATGTTTG GCCACATGTA TACATACTTA
ATTGTTCTTG ACGGAAATGC CACTAACGAG TTATTACACG AATATCGTTT CTTTTCATGG
TCCATAATAA ATGAGGTCAT TATATCTGGT GAAGATGCTG GATGCTTAAA TTCAGCTAAA
ATCTACTCCG GCGCCAAAGT GGGTAAAGTT ACCAATCGCC TATGCGAGTC TGAGTCAACC
AAAGCATTCG ACTCATATTC AATGGACAAT AGCATAGTCA AGCTGAGGTT TGAATCTTTC
CGTGATTCTG AAAGGCATTC AAGATTATTC ACATTCCAGC CTAACAAAAG CCAAATGTTC
TGA
|
|---|
| Protein sequence | MSKEDLESEV VEKNTYCFED NEYCKLALDD SNQLLPYKEK ISKKWVLTVI FSIILSLFSF
CLYLFVRYSY SNDSVKSFGH NVDEWVTMTA IDGEPMQVIE NNFERIPLEA KVMNTTVYEK
QKLVNGLSAT FSKFEDFEFD SVFLTLNFTN NDNDTENVNV IEISIDGHPV WRTSPPLSKV
GTTTYSSTSK DISKYISLFG KSSNQFKVQI LEGSHDKISF ALALTLANCG KEKPVIGSPI
TVSSLFNSTE PANDIIALTK SNGEVFDFSK NDKFLVELPK FSGKTFAAKL ELFVSAGKSD
VEFFILNRNS PFRLLNIFIN EQLIATISPN PILFHSNSII PSAYSGPIAP FGSFTGFSYE
VNLANVLPIL WGQKSTLEVQ LVSPVNDMFP LEIENVFSQK DNYGVNDFRF SSPAKPIMKG
DNQANTEWYV SGNIFLWENK DILTSQGEIL GSGITETYSS SLRYDPRKIA TKILTVSDDF
YSSHSSTLRF SLRNQTLLNF TVNQKGSTKS YLTEHQINGK ISLDVVGHKL SMFGHMYTYL
IVLDGNATNE LLHEYRFFSW SIINEVIISG EDAGCLNSAK IYSGAKVGKV TNRLCESEST
KAFDSYSMDN SIVKLRFESF RDSERHSRLF TFQPNKSQMF
|
|---|
| |