Gene PICST_29166 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_29166 
Symbol 
ID4851898 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009068 
Strand
Start bp3131606 
End bp3133435 
Gene Length1830 bp 
Protein Length609 aa 
Translation table 
GC content45% 
IMG OID640393606 
ProductCBS domain-containing protein 
Protein accessionXP_001386928 
Protein GI126275953 
COG category[T] Signal transduction mechanisms 
COG ID[COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCAGCT TTAAGACCCC CAGAAAGTCT GGCAGTGCCA CGTCTGGATC TTCCACTACA 
GCGGTAGATA GTGCTGTCTC AGATTCCAGA AAGAGACAGA CCAAGCGAGA TGATGCTATC
AGAAGAAGAA TCGAAAACGA CTTGAACAAG AAAAAAAGAG GAGGAACAAG AACCTCTCGC
AATCGTAGAG CAGCTCCCGG AACTGTTTTA TCGTTAAAGC CTACTGACCC CATCATTTGC
AAGACTTCTT CTACAGTGTA TGAAGTATCG CAGTTGATGA CAGCTAGAAG AGAGAACTGT
GTGCTTGTGG TCAACGATGT AGGAGAGTTG TTGGGGATTT TCACAGCTAA GGATTTGGCT
TTCAGAGTGG TTGGTTCGAG CTTGAATGCT AACTCAGTCA CTATTGATCA GATCATGACT
CCCAACCCAC AGTGTGCAAA TGCCAACGCT GCTGCGTCTG AAGCTTTGAC TCTCATGGTG
GAAAGAGGGT TCAGACACTT GCCCGTTTTG GACGACAACA ACCAGATCGT CGGTGTTTTG
GATATTACTA AATGCTACGC CCAACAAATG GAGAAGTTGG AAAGGATGCA TGCCTCTTCC
AAAAAGTTGT ACGAGGCTTT GGATTCTGTC CATTCAGAAA TGGGCGTTGG ACAGCAACCA
CTCCAGGTGT TCAAATATTT TGAGAACTTG AAGAGCAAGA TGAACGGGCC CACTTTGGAG
TCGGTTTTGG ATGCAAACAC CGTGCCAGTG TATAGCAATG TGAAGTCTAC AGTGTATGAA
GCTACTGTTC TCATGAAAGA GAACAGAACT ACTGCAGTTC TTGTCAAGGA TAATAATGAC
GAGGTCACGG GAATTTTCAC CTCTAAAGAT GTGGTATTAC GAGTCATAGC TGCTGGTTTA
GACCCCAAGA ACTGTTCTAT AGTCAGAGTC ATGACTCCTC AGCCAGATGT AGCCAAGGTC
AACTTGCCCA TTCAGCAGGC TTTGAGGCAG ATGTTCGAGG GCCATTACTT GAACTTACCT
GTAGTCGGCG ACCAAAACGA TATCATCGGA ATAGTGGAGG TGTTGAAGTT GACGTATGCC
ACTTTGAACC AAATTAAACA GCTTGAAACA GCTGACTCTG TAGAGCAATC AGGTGCTACT
TTGGAGCAGC AGGATTCGGA GGGTCCAGCT TGGAACAAGT TCTGGACTTC GATGGATGAC
GATGACAGCG ATTCTGTCCA CTCTGGTTCC ATCACAGGAA GTGCTCCAGA TGTGACAGCT
TCTGAGTTCC AATCCTTTAA CATCGACATC AAACCTTCTG ACTCCATTTC CTACGTAGAG
TCGCCCGTAA AGCCAGCTAG ACAATCCACT TTATCTTCTC CAATTGAGGA TGACTTACCC
TTCACTTTCA AATTCAAATC CCCAGCCATT GAAGGAAGAG TGCACCGTAT ATCTATAAGA
GCCAGCGAAG GGCTTGACAA GTTGCGGGCT TTGATGGACG CGAAATTGCA CACTAAGGAC
TTTCAGAAAT TGAAAGTGAG CAAAGATAAT AGCGACGAAT TGTATGCTAT CAGTTACGTA
GACGACGAAG GAGATATTGT TTCGATTACG TCTGACAATG ACCTTGTCGA ATGTATTGCT
ATTAATACCA GACTAGACAA TGACAAGGCA GACCTCTACC TTCATAACCC TCACGAGCAT
GCCCCAGTGG ACACTATCAA AAGAAGTCTT CACGACAAGA GAGCCAAGAC GACTATTATC
GAAGGTGTTT CCAACGAGTT GTTGATTTCA GGAGCTTTGG CGTTCTTGGC TTCATCCATA
GTTGTCGGCT TGACCCTTAC TAGAAAATAG
 
Protein sequence
MSSFKTPRKS GSATSGSSTT AVDSAVSDSR KRQTKRDDAI RRRIENDLNK KKRGGTRTSR 
NRRAAPGTVL SLKPTDPIIC KTSSTVYEVS QLMTARRENC VLVVNDVGEL LGIFTAKDLA
FRVVGSSLNA NSVTIDQIMT PNPQCANANA AASEALTLMV ERGFRHLPVL DDNNQIVGVL
DITKCYAQQM EKLERMHASS KKLYEALDSV HSEMGVGQQP LQVFKYFENL KSKMNGPTLE
SVLDANTVPV YSNVKSTVYE ATVLMKENRT TAVLVKDNND EVTGIFTSKD VVLRVIAAGL
DPKNCSIVRV MTPQPDVAKV NLPIQQALRQ MFEGHYLNLP VVGDQNDIIG IVEVLKLTYA
TLNQIKQLET ADSVEQSGAT LEQQDSEGPA WNKFWTSMDD DDSDSVHSGS ITGSAPDVTA
SEFQSFNIDI KPSDSISYVE SPVKPARQST LSSPIEDDLP FTFKFKSPAI EGRVHRISIR
ASEGLDKLRA LMDAKLHTKD FQKLKVSKDN SDELYAISYV DDEGDIVSIT SDNDLVECIA
INTRLDNDKA DLYLHNPHEH APVDTIKRSL HDKRAKTTII EGVSNELLIS GALAFLASSI
VVGLTLTRK