| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_28646 |
|---|
| Symbol | |
|---|
| ID | 4851409 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009068 |
|---|
| Strand | + |
|---|
| Start bp | 1748165 |
|---|
| End bp | 1748929 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | |
|---|
| GC content | 41% |
|---|
| IMG OID | 640393117 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001387563 |
|---|
| Protein GI | 126274528 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1500] Predicted exosome subunit |
|---|
| TIGRFAM ID | [TIGR00291] rRNA metabolism protein, SBDS family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0803186 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGTGA TTAACCAACC TATGAGTCAG ATTAGATTGA CCAACGTGTC ACTTGTCCGC
ATGAAAAAGG GCAAAAAGAG ATTTGAGATT GCCTGCTACC AGAATAAAGT CCAGGACTGG
AGACTGAAAG TGGAAAAGGA TATCGACGAA GTGCTTCAGA TTCCCCAAGT TTTCCAGAAT
GTTTCCAAGG GCCAGGTTGC CAATAACGAC GACTTGATGA AGGCTTTTGG AACTACCAGC
CAAGACGAAA TAATTCTTGA AATTCTCAAC AAGGGCGAAA TTCAACTTCA CGAGAAAGAA
AGATCAGCTA ACTTACAACA GAAACAAAAT GAATTTTTAA CCATCATATC CACCAAGTGT
ATTAACCCTA AATCGAAGAA GAGATATCCT CCTTCAATGA TCCAGAAGGC ATTGAACGAA
GTCAAATTCC ATTTGAACCC ATCCAAACCT ACAAAGCAAC AGGCGTTGGA TGCTATCAGA
CTACTTGTAG AAAAGCAGAT TATTCCTATT GCCAGAGCCC AGATGAAGGT CAAAATCACC
TTGTCTAAGA AAGCGTACCA GAAAGTCTAC AAAGATGAAA TTGAACCTAG CATTGATCTG
ATTATAGACG AAGATAAAGA CGGTAAGGTG TACGAGTGTG TCTGTATTAT CGATCCTATT
AACTATAGAA AGATTGTAGA TGTGTTGGAG GGTGATGGAG CCAAGATCTC CAAGAGTGAT
GGTTCCATTG AAGTGATAGA CATGGCCGCT ATCAAGGAGA CTTAG
|
|---|
| Protein sequence | MAVINQPMSQ IRLTNVSLVR MKKGKKRFEI ACYQNKVQDW RLKVEKDIDE VLQIPQVFQN
VSKGQVANND DLMKAFGTTS QDEIILEILN KGEIQLHEKE RSANLQQKQN EFLTIISTKC
INPKSKKRYP PSMIQKALNE VKFHLNPSKP TKQQALDAIR LLVEKQIIPI ARAQMKVKIT
LSKKAYQKVY KDEIEPSIDL IIDEDKDGKV YECVCIIDPI NYRKIVDVLE GDGAKISKSD
GSIEVIDMAA IKET
|
|---|
| |