| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_28452 |
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| Symbol | DUR1 |
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| ID | 4851230 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | + |
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| Start bp | 1261639 |
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| End bp | 1267107 |
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| Gene Length | 5469 bp |
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| Protein Length | 1822 aa |
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| Translation table | |
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| GC content | 43% |
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| IMG OID | 640392938 |
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| Product | urea amidolyase |
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| Protein accession | XP_001387473 |
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| Protein GI | 126274216 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism
[I] Lipid transport and metabolism
[J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases
[COG1038] Pyruvate carboxylase
[COG1984] Allophanate hydrolase subunit 2
[COG2049] Allophanate hydrolase subunit 1
[COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit |
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| TIGRFAM ID | [TIGR00724] biotin-dependent carboxylase uncharacterized domain
[TIGR02712] urea carboxylase
[TIGR02713] allophanate hydrolase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.407983 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCTATA TAGGCTGGTC CGTCCAGGAC TGGATCCAGT TCCATTACCA GTCCACTCCC
AATGAGTCGT TTGCACTCTT ACAAGAATTG CTCGGGGACC AGAACAAGGC TCCAGAAGAC
CCAGCCTGGA TCTCGTTGGC TACGCTCGAC AATTTAAAGC ATCAGTGGCA TTTCTTGCAG
TCCAAGTCCA ACAAGTTGGA CTTGCCCTTG TATGGTGTGC CTGTGGCCAT AAAAGACAAT
ATTGATGTCA AGGGTTTTGA AACGACCGCC GCCTGTCCAT CTTTCGCCTA TTCGCCAGAA
GACGATGCCA CCACAGTAAA ATTGTTGAGA AACGCTGGAG CCATCGTCAT TGGTAAAACA
AACTTGGATC AGTTTGCTAC CGGCTTAGTT GGAACCAGAT CTCCATACGG AATCACCCCC
AACACCTTCA ACAAAGACTA CGTCAGCGGA GGCTCTTCTG CTGGCTCTGC ATCAGTTGTA
GCCAGAGGTA TTGTACCAAT TTCCTTGGGT ACAGACACTG CTGGTTCTGG AAGAGTCCCT
GCAGCTTTGA ACAATATCAT AGGGTTGAAA CCAACCAAGG GTGTTTTTTC CTGTGCTGGT
GTCGTTCCAG CCTGTAAGTC GTTGGACTGT GTCTCCATCT TTTCACTCAA CTTGCAAGAT
GCCCAGTTGG TATTCAATAT CATGGCCCAA GAAGATGCCC TCAACGATGA ATACTCGAGG
CCATTGCCTG CAAACCCATT GATCAAATTC CCAGCTACAC CCAAGATAGC CGTTCCCACC
AACTTATTGT GGTTTGACGA AACCGAAAAC CCCAAGATTT ATAACAAGGC TGTTGATCAC
TTCAAAGAAA ATGTCGGTGC TGAATTGGTA CCATTGAATA TTGATCTTTT ATTGGACTTG
GCCAAGTGTT TGTACGAAGG TCCTTGGGTT TCTGAGAGAT TCGCAGCCAC GAAAGATTTT
TTCGCAACCA ACCCTCCAGC AGCAGATTTG GACCCTACAG TGACTCAAAT TATCAAGGGA
GGTGAAAAGC ATTCTGCTGC TACTGCCTTC GAATATGAAT ACAAAAGACA AGGTATCATC
CAAAAAGTAT CCAAATTGTT GGAAGGCATC GATGCTATAA TAGTACCTAC TGCACCTCTC
AATCCAACTA TTGCGGAAGT AACAAAAGAA CCAATTAAAG TCAACGCCAA CCAAGGTACT
TACACCAACT TTGTAAATTT GGCTGATATG TCTGCGTTGG CTATTCCAGC AGGTTTTCGC
TCCGACGGTT TACCATTTGG TATTACGTTG TTGTCGCACA AATTTAACGA TTACGCACTT
CTCGACTTGG CTAGTCGTTA TTTGAAGGGT GTAGACTCAA CAGAGAAGCG CTTCTACGGC
TGTTTGAAGG ATAAGCCAGT TTCCAGCTTG GGAGATGAAT TGCTTCCTAA TATTCCAGGT
TTCGACCCAG AACTGCAAAT CAAATTAGCC GTAGTTGGTG CCCACTTAAA GGGTTTCCAA
TTACACTGGC AATTAGAAAA AGTCAGAGCC AACTTGATTG AGTCTACCAC TACATCAGGA
AACTATAAGC TCTACGCCTT GCCCAAGACT GGACCAGTTG CGAAGCCAGG CTTGAGGAGA
GTCACTGAAA ATGGTACCAA AATTGCTCTT GAAGTGTATG CCGTTCCAAA GGAAACTTTC
GGAGACTTCA TTGCCATGGT TCCAGAGCCT TTGGGAATTG GATCTGTAGA GTTGACATCT
GGTGAATGGG TGAAGTCTTT CATTTGCGAG GAAGTTGGAT ACAATGCTCC AGGAACAACC
GATGTTTCGT CCTTCGGTGG ATGGAAGAAT TACCATGAAC ACTTAGCTCA GGAAGCAAAG
GCTCAAAAGA AACCATTCAA ATCTGTTTTG GTTGCCAACA GAGGTGAGAT CGCCGTCAGA
ATCATCAAGA CCTTGAAAAG ATTGAATATT AAGTCGATTG CTGTATACTC TGACCCAGAT
AAGTATGCCA AGCATGTATT GATTGCCGAT GCTGCTGTTC CATTGCATGG AACTTCGGCT
GCTGAAACCT ATATCGCAGT CGAAAAGATC ATTCAGGCTG CTAAGGATAC TGGTGCCGAA
GCCATTATTC CTGGTTACGG GTTCTTGTCT GAAAATGCTG ATTTCTCTGA CCGCTGTGGA
AAAGAAGGAA TTGTCTTTGT AGGTCCATCT GGTGATGCTA TCAGAAAATT GGGTTTAAAG
CACTCAGCCA GAGAAATTGC CGAAAAGGCT GGGGTTCCTT TGGTACCTGG TTCCGGTTTA
GTTAAGGATG CTCTCGAAGC CAAGGAAATC GCAGCCAAGT TGGAATATCC TGTCATGGTT
AAATCAACAG CTGGTGGTGG AGGTATTGGT TTACAAAAAG TTGATTCAGA AAAAGACATT
GAGCGTGTTT TTGAAACAGT TCAACATCAA GGTAAATCGT ACTTTGGCGA TGCTGGTGTT
TTCTTAGAGA GATTCGTAGA AGACGCCAGA CATGTTGAAG TCCAGATGTT TGGAGATGGT
AAGGGAAGGG CCATTGCTCT TGGCGAAAGA GATTGTTCTT TGCAACGTCG AAACCAGAAG
GTTATTGAAG AAACTCCTGC TCCAAACTTG CCAGAGGCTA CAAGACAAAA GATGAGAGAT
GCAGCCGAAT CCTTGGGTGC CAGTATGAAT TACAAGTGTG CCGGTACTGT TGAATTTATC
TACGACGAAA AGCGTGATGA ATTCTACTTC TTAGAAGTCA ATGCCAGATT ACAAGTTGAA
CATCCAATTA CTGAAATGGT GACGGGCTTA GACTTAGTGG AGTGGATGTT GTACATTGCT
GCTGATGATC CCCCAGATTT CTCTCAAAAA ATCGAAGTCA CTGGTGCTTC TATGGAAGCC
AGATTGTATG CTGAAAACCC AGTGAAGGAT TTCATGCCTT CTCCAGGCCA ATTAACCGAA
GTCAAGTTCC CAGAATGGGC CAGAGTTGAT GGCTGGGTTG AAAAAGGTAC TGTTATCTCT
GCTGAATATG ATCCTACTTT GGCTAAGATC ATTGTTCACG GAAAGGACAG AAATGATGCT
TTGAAGAAGT TGAGACAAGC TTTGGATGAA ACAGTTGTTT TCGGCTGTAT CACAAACATT
GACTACTTAA GATCGATTAT CAACTCGTCT ATGTTCGCCG AGGCCAAGGT TGCCACCAAG
GTATTGGATT CCTACGATTA CAGACCTACG GCTTTTGAAA TCATAAGCCC AGGTGCTTAC
ACAACCGTAC AAGACTACCC TGGTAGAAAA GGCTACTGGC ACATTGGTGT TCCTCCTTCT
GGTTGTATGG ACGAGTACTC CTTCAGAGTT GCCAACAGAA TTGTTGGTAA CGATAAGGTT
GCTCCTGGTA TTGAGATCAC CTTGAATGGT CCAAAGTTAT TGTTTCACCA TGATGCTGTT
ATAGCAGTTA CTGGTGGAGC TGTTGAAATT GATATCAATG GATACAAGGT TGAACAATGG
GCTCCTCTCC ATGTCAAGAG AGGAGACAAG GTGTCAATTG GGAAATTGAC TACTGGTTGC
AGAGCTTACT TGGCTATTAG AGGAGGCATT GACGTCACTG AATACTTAGG CTCCAGATCT
ACTTTTGCGT TGGGTAACTT GGGTGGCTAT AATGGTAGAG TTTTGAAATT GGGTGACGTT
TTATTCTTGG GTCAACCGGA AATTTCTAGT TGTACTTTGC CAGCTCCGAT TTCTGAACCA
TCTAACATTG CTCCATCATT GATTCCTAAT TACGACAACA AAGTTTGGCA AGTTGGTGTT
ACATGTGGAC CTCACGGTTC TCCTGATTTC TTCAAACCTG AAGCGATTGA AACTTTCTTC
AAGGACACTT GGAAAGTTCA TTACAATTCT AATAGATTTG GTGTTAGATT GATTGGCCCA
AAGCCTGTTT GGGCTAGACC GGATGGTGGT GATGCAGGTT TGCATCCTTC CAACACTCAT
GACTACGTTT ACTCTTTAGG TGCTATCAAC TTCACTGGTG ATGAACCTGT TATCTTGACT
TGTGACGGTC CATCCTTAGG TGGGTTCGTC TGTGCTGCCG TTGTTGTGGA ATCTGAAATG
TGGAAAATCG GTCAAGTAAA GCCTGGTGAA CAAATTCAAT TCATTCCAAT TTCCTACGAA
ACTTCGATTG AATTAAAGAA CCAACAGGAC AAAATCATCG AAAACTTGAC TGGTGACTTG
CCTTCTTTTG ATGGTAAGGC AATCAAGCCG GAAAATCCTG TCTTATTTGA ATTCCTGGCT
TCGTCCAACG CTCCAAAGGT TGTTTATCGT CAAGCAGGTG ACCGATACAT TTTGGTAGAA
TACGGTGAAA ACTGTATGGA CTTGAATACT TCGTACAGAA TTCAGAGATT GATTGAAATG
GTTGAAGAAC ACAAGACTAG AGGAATTGTT GAAATGTCTC AAGGTGTTAG ATCAGTTTTG
ATCGAGTTCA ACCGCGAGGT TACCCAGGAT GAACTCTTGA AGACGTTGAT TTCTTACGAA
AAAGAGATCT TTTTCATCAA CAAGTGGGAA GTTAAGTCGA GAATCATTAA ATTGCCAATG
GCCTTTGAAG ACAAGAAGAC TTTGGATGCT GTTAAGAGAT ACTCAGAGAC CATTAGAAGT
GAGGCACCAT GGTTACCAAA CAATGTTGAC TTCATAGCTA ACATCAACGG CATTACTAGA
GAAGAGGTCA GAGATTTGGC ATATACTGCT AGATTCATGG TGTTGGGTCT CGGTGATGTC
TTCCTTGGTG CACCTTGTGC AGTTCCATTG GATCCAAGAC AAAGACTCTT GGGTACGAAG
TACAACCCAT CTAGAACATA TACTCCTAAC GGAACTGTGG GTATTGGTGG TAGTTATATG
TGTATCTACA CCATGGAATC ACCAGGAGGA TATCAATTGA TCGGCAGAAC TGTTCCTATT
TGGGATAAGT TGACCTTGGC TTCTCATTCT GGTGACAAGC CATGGTTGTT GAGACCATTC
GATCAAGTTG AATTCTATCC AGTTAGCGAA GAAGAAATCG ACAAGTTCTC TGAAGAAATG
AATGCTGGTA AGTTTAAGGT CGATATTATT GAAACTGTCT TCAAACACGG CAAGTACTTG
GAGTGGATCC AAGAACATTC TGACTCAATT GCTGAATTCC AGAAGAACCA AGGGGGTGAG
AAGTTAGAAG AATTCAACCG CTTGATCCAG ATCTCGAACA GTGAATTGGA AAAATCTGGT
ACCAAAATTG TAGAAGACGA ATCCTACGAC GACACCCACG AATTGGTTTA CTCGGAATAC
TCTGGTAGAT TCTGGAAATC CTTAGTTGAG ACTGGTGATG AAGTTAAAGC TGGTCGTGCA
TTAATTGTTG TTGAAGCTAT GAAAACTGAA ATGGTTGTCT CTGCACCAAG AGACGGTAAG
GTTGTCAAGA TCTACCATAA GAACGGTGAT ATGGTGGATG CTGGAGATTT GGTTGTTGTT
CTTGCATGA
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| Protein sequence | MSYIGWSVQD WIQFHYQSTP NESFALLQEL LGDQNKAPED PAWISLATLD NLKHQWHFLQ
SKSNKLDLPL YGVPVAIKDN IDVKGFETTA ACPSFAYSPE DDATTVKLLR NAGAIVIGKT
NLDQFATGLV GTRSPYGITP NTFNKDYVSG GSSAGSASVV ARGIVPISLG TDTAGSGRVP
AALNNIIGLK PTKGVFSCAG VVPACKSLDC VSIFSLNLQD AQLVFNIMAQ EDALNDEYSR
PLPANPLIKF PATPKIAVPT NLLWFDETEN PKIYNKAVDH FKENVGAELV PLNIDLLLDL
AKCLYEGPWV SERFAATKDF FATNPPAADL DPTVTQIIKG GEKHSAATAF EYEYKRQGII
QKVSKLLEGI DAIIVPTAPL NPTIAEVTKE PIKVNANQGT YTNFVNLADM SALAIPAGFR
SDGLPFGITL LSHKFNDYAL LDLASRYLKG VDSTEKRFYG CLKDKPVSSL GDELLPNIPG
FDPELQIKLA VVGAHLKGFQ LHWQLEKVRA NLIESTTTSG NYKLYALPKT GPVAKPGLRR
VTENGTKIAL EVYAVPKETF GDFIAMVPEP LGIGSVELTS GEWVKSFICE EVGYNAPGTT
DVSSFGGWKN YHEHLAQEAK AQKKPFKSVL VANRGEIAVR IIKTLKRLNI KSIAVYSDPD
KYAKHVLIAD AAVPLHGTSA AETYIAVEKI IQAAKDTGAE AIIPGYGFLS ENADFSDRCG
KEGIVFVGPS GDAIRKLGLK HSAREIAEKA GVPLVPGSGL VKDALEAKEI AAKLEYPVMV
KSTAGGGGIG LQKVDSEKDI ERVFETVQHQ GKSYFGDAGV FLERFVEDAR HVEVQMFGDG
KGRAIALGER DCSLQRRNQK VIEETPAPNL PEATRQKMRD AAESLGASMN YKCAGTVEFI
YDEKRDEFYF LEVNARLQVE HPITEMVTGL DLVEWMLYIA ADDPPDFSQK IEVTGASMEA
RLYAENPVKD FMPSPGQLTE VKFPEWARVD GWVEKGTVIS AEYDPTLAKI IVHGKDRNDA
LKKLRQALDE TVVFGCITNI DYLRSIINSS MFAEAKVATK VLDSYDYRPT AFEIISPGAY
TTVQDYPGRK GYWHIGVPPS GCMDEYSFRV ANRIVGNDKV APGIEITLNG PKLLFHHDAV
IAVTGGAVEI DINGYKVEQW APLHVKRGDK VSIGKLTTGC RAYLAIRGGI DVTEYLGSRS
TFALGNLGGY NGRVLKLGDV LFLGQPEISS CTLPAPISEP SNIAPSLIPN YDNKVWQVGV
TCGPHGSPDF FKPEAIETFF KDTWKVHYNS NRFGVRLIGP KPVWARPDGG DAGLHPSNTH
DYVYSLGAIN FTGDEPVILT CDGPSLGGFV CAAVVVESEM WKIGQVKPGE QIQFIPISYE
TSIELKNQQD KIIENLTGDL PSFDGKAIKP ENPVLFEFLA SSNAPKVVYR QAGDRYILVE
YGENCMDLNT SYRIQRLIEM VEEHKTRGIV EMSQGVRSVL IEFNREVTQD ELLKTLISYE
KEIFFINKWE VKSRIIKLPM AFEDKKTLDA VKRYSETIRS EAPWLPNNVD FIANINGITR
EEVRDLAYTA RFMVLGLGDV FLGAPCAVPL DPRQRLLGTK YNPSRTYTPN GTVGIGGSYM
CIYTMESPGG YQLIGRTVPI WDKLTLASHS GDKPWLLRPF DQVEFYPVSE EEIDKFSEEM
NAGKFKVDII ETVFKHGKYL EWIQEHSDSI AEFQKNQGGE KLEEFNRLIQ ISNSELEKSG
TKIVEDESYD DTHELVYSEY SGRFWKSLVE TGDEVKAGRA LIVVEAMKTE MVVSAPRDGK
VVKIYHKNGD MVDAGDLVVV LA
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