| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_28386 |
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| Symbol | RIF1 |
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| ID | 4851163 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | - |
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| Start bp | 1088057 |
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| End bp | 1093147 |
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| Gene Length | 5091 bp |
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| Protein Length | 1696 aa |
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| Translation table | |
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| GC content | 40% |
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| IMG OID | 640392871 |
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| Product | RAP1-interacting factor, involved in establishment of repressed chromatin |
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| Protein accession | XP_001387854 |
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| Protein GI | 126274149 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.982301 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGCCC GATCAAAACG ATCCAGACTG GCCAAGAACG CGCGGTCCAA GGTGAAGAAT
GAGGCACGCT CGTCACGAGA ACCTTCCCCA AACTTGTCAG TAGCATCAGA AGCACCCACA
TCACACAAGT CATCCAGATC TTCACCTAAA CCTACTACTA CCAGTTCTAA TTCTAATCGA
AGTAATGGCA TATCGGCAGA CGATTCTTCC AACTCAAGTT CGTCAGACTT GGTCAATGAC
ACACCAGTGT CAAATATAGC GACAAACTCA CCGTCCAAAT GTAACTCTGC TTCTATGTCA
GCTTCGTCGT CGTCATCTAG ATCCACATCA CCTGCAGCCA CGGCTTCAGC TACAGTTCCA
GCACCAGAAG CACCAAAAGA AATTTCTCCC CCTCCAATAG TCTCAAAGTC GGCAGTTGTA
GTACCGCTTC ATAAGCTCGA ATATGAAGTC GAAAACAGCA ATAACGACGA ATTGAGCTCG
TCACCCATCA AAAGAAGCAG TCGTGGTGCT CATTCTATAG CGAAAGAACT TTCTCCATGT
AGAAGAGAAA TGTCACCTAT ACCGTCTTCT TCACCCGTGA GAAAGAAATC GGTGGCATTT
TCTGACGATA TTGCGTATAA CGATGACAGC CCTGCTGTTG TTAGTTCCCC TGATCCTCGC
CAAACTCCTA GAGGCTCTAT TCTCAAGACA TACAACATGT CTTTTCGCAA CGGTTCACCT
GCTGATCCGA GTAACACTTC CTTGTGGACT AGATCACCTT TTAAGAACGA CGATTCCTAC
GAACCCCGCA ATCCCGTCTT CTGGTTATCC GGAACGATTG TTCAGCTTCC GCCAAATTCT
AGCGAATTGC CTCGCTTGGT AGATGGCTGT GTACGTGTGC TTCAGGACCC TCAATTTGAC
AAGAAGTTCG AAGTTTATGC CACAATCAAC CACATCTGTA AGTCTAACAC TAATGATACG
TTGTTGAGAA TATTCTCCGC TCCGGTCTCG CAAATGAATT CCAGCCCTAC GAAGGCAGCA
GTCACAAGAT TCAGAACTTT TCAACCGGAT TCGAACTACA TAATAGCATT GGCCGCACAG
ATTCGTAGAG ATATCGTAGT CACAGAAACA GAGATCTTTA ATCGTAATGA CATCATCAAA
CATGAGCTTT CGACCTCCCA GCCACTTATG CGATCTGATC CTTTCAGAAT AAGAATAATC
AACCAGGCAT TAAAGTTGAT TAACACTTTT CTTATGAACG AAGACCTCAA CGGTTTTGTC
CCTGTTGAGG ATGTGAGGTG GTTCTACCGT CACTGCTGTT CAATATTGAC CACGGAAAAC
ATCTCTAAAG CTCTTGTTTC ACCTTACTTG ATTGTCATCA AGGACTGTAG ACTCATAAAC
AAGAAAAAGC GTATGCTTTT TGACAATCCA GAGCTTCCTG AATTGATGAT ATCAAGTATT
ATCAACATGA GAAGCTATCC ATCTTCTACG ATCGTTTCTG AACGTTTCTT GTGCTTCAAG
AACTTCGCCA ACAACTTTCC TAATATCATG GCTAAAAATA TAAACCATTG GTTCGAAGTG
TTCGTTTTGA ATGTATGCTC TATGGCATCT CCCTTTTCAC CGAAGACTCT TGAAATAGGA
ACCAATTGTC TCTTGGAAAT TGCGAAAGTA TTCTTAGATA ATGTCTCAGT TCAATCATCC
GTTACTTCTT TGCTCTCTTC AAAAATTTCG AACGATGTCA AATCACTTGC GTCCGAAAAC
GGATTGGATT TGGATATTGA TTTAATATCA TCGGAAGTTT CCGTTATTGA CTATATCTGT
ATGAAATTAG AAGAAATGAT AGAAACTGGA CGCTTCAAAG AATCCATGGA AATCTGGGTA
TCCATCACAT TACTTGTAGG AGATGGTGGA AGTTCTTTCG ATCAGTGGGA ACATTTGAAC
AAATGGCTCA GGGTGCAAAA GATTTGTTTC AATTCACAGT ATCAGTCAGC CAAGATAATT
GCCTTGAACA GCTGGAAGGC AGTTATCTAC AATGTATGCC ACAATGATAT GGACTTCATG
ATGAAGGTAG TTGAACCCAT ATTGAAGAAC CCAGATGTCA AGCAGCGGCA ACAGATGCTA
AATGCTTGTG TCAAAAGTAG AATAAGACTT TTGACTCATG TGTTCTTCAG TATCAGCTCC
CCTATCACAT CAAAGGAAAT TGCAGAGAAC CTCAACCATT TATTCATGGC CATACTTTAC
TCATTGTTGA AACCATTGTT GGCAAAACTG GCAACGAAGT ATTTGCACAT CTATTGGGAC
AAAGTCATAC AACCGATGAT CCTTAACTTC TTTTTCAAGA AAGAGAACTC AAGTCTTCAT
TTGCATTCAC TTGGATTGAA GGTCCTCCTT CGTTTATTGA AACCCACAGT TCCGCCCAAA
GACCGGAACA ATCAAGTTAG GTGTTTAGCC AACGACCCCA TCTCTATTCT TGAGATTCCT
TGCTTGCCTT GTAGATGGGT ATATTCCAAG TTTGATAGGA TTATTCCTCA TATTGCTTTA
GTTTTCCAGC TGGATCACCT TGCTGTTGAC CAAAAGGTGA ACTTGTTTAT ATCTTTCTTG
ACAGCTGTGA AAATGGTGAC GAAGAAAGAA CCGAGAACTA CCGATCAGAC TTTTGATATT
ATCGAAAGCC TTCCCTTTGT GTTGGAGCAG TTGTTTAAAA CAAGTAGTCT CTCATTTGAT
TCCGCTTACA ATTTGGTCAT AAACTTAAAC GATACGTTTA AGCCAGCCAC ATTGGTGACC
CGTTCAATTT CAGAAAGAAC TTCAGAATCC AATCTGAATA TCTACTATAT TATTCTCGAA
AACTGTATTT CCAATTTGAA TAAGGAGCAA CTTCGGGAAA TCGTTCAGTT AATCATAGCT
TCAATTTCTG ATAGGAGAGT TTTGTTTTTC ATGCTTGATT TAGCAAACTT GCAAAAAAGA
TTGCAAATTG AGGAGCTCTA TATACTCATT GTTGACTTCT TGAACAATAG AACCATAATT
AGTAACGAAC CAGATTTGCG CCTCTATGGT GAATTCTGTC AGATTATTGG TTCTGGTGCT
GAAGTCTTTG TGAAGCGTTT AATGCAAAGT GTGGTCAGTA TATCCAAAGC TGAAGAATTA
AAGCAGTGCT TAGATTATTT GCAAATATCG ACGTGGACAA AGGAGCTGTT CAAATATTTC
GTTCTGTTAG TACATAATGC TCCAAACAAG TACATTCAAG ATTATTCGAT TCAGAAAATC
GCAATAAGAT TTGCTGACAA CGGTACATTT GTTGACTTGT TGAGATATTT GATCGACTGT
GAGTTCTATT TGGAAATTGA TGAATTGAGC GACGAAATTC TTGATACCGC CCAACATCAA
AGAGGTTTCT TTGATTTTGA CTTTCGCAAA ATGTGGTCGG GATTGTTGTT GAAGAGACTG
GAGGATAAAG AAGATAAAAA TTTCGACTCA TTATTATCCA AGTCCTATAT CAAATTGGAT
ATTGATATTG AACAATTCAT TAGAGATAAT TGGAGAAATC TACCTTTTCT GACGTCTGCT
TGGGCCAGCA AGAATGACAC TTCTAGGGTT CATGGTTTGG ATGCCTATTT GGAAGCTCAA
AATGATGTAA TGAATAAGGA AAATTTTGAT ACCAGCATGA TTATAACTAG TACGGAAGAA
GACAGTAGTG AAACCGCATT AGCTGTCCTG GCCCCTGATA GTAGCAGTAT CGAGAAACCC
GCGGGCAGTG GTCAACATAC CCACGATAGC CGTGAAGTTC TCAAAGAGTT GAACACGAAT
ACGATTTCGC CCTTAGAGAA GATTGATTCC ACTTCGGCAG CATCCAGTAA TGAATTCCAA
TCAGAGAATG TCGATAGTCA AAGCAAAAAT GGAAAAACAT CTACTAAGAC TTCTGGTAAA
AATACTTCTA AAAATTCTAC TAAAAAGGCT ACTTCGTCTT CTTTAATGGA ATTTGACATT
CATAATTTTA CAGCAATTTT GAACGCAAAA CTTGAACATG CTCCTGCCAA GAAAGGAAAT
AAGAAGAGGA AAAGCTCTAG TAAGACTTCA TCAACTGAAG CTTCTCCCGT GGAAATGGCC
ATTATTCCTG TTCTGCCTAC GGAGCAGATT CTCTCGTCTT TGGATGATAA TTGTGATATT
TCTGAGGTGG AGAATGATGT TTTATCGCAA GTCGATGATT CGGATCTAGT TGAAGATGAA
AGCGTTACTT TAAATACTTC TAAGGAAGAA GAGCAAGTAG CATCTCCGGT TGCAGGACTC
AGAAGAGGTA GAAGTAGAAC CAAGAGAAAA CAGGAAGCTC AAGATACAAC CGAAGAACTT
GGCCAACACA TTGAATCTCC AGTCAAAAAA CGCAAGACAG TCCTGGCTGA AGTTCCAAAT
GAGAAATATG ACTTTGAAAA CAATACCAGT CCAACCCTAA TTCTGGATTC CAATGACGTG
GTTGTATTAC AGCAAGTCGA GGTGAGGACG GATGTTCTTA ACAGTTTGGA TCTGACTTCT
TCTAACGAAG GTAGTAGACA GTCAGAATTG GGCACTTTTA AGTCCCAGAG CTTCAATGCT
CATTCGACTG CAATTATTAA AGGAGAAGTG CATTTGTCAG ACTCATCCCA AGAAATTTCT
GAAGTGGAGC ACAATCTTCT TGTTGGTAAT GTTCTTCATG AGAAGGAGAA TGTGCTTTCA
GTTGTTCCAG AAGCAGAGGA ACCAGAAAGT CTTCCAAAAG TTACTTCTGA TTTCGAGAAC
AATATTGCAC AGAAGACAGG AGACGTTGAA CTCATAACAA AGGATGAAAT TGCGTCAGTT
CCTTTGAAAA ATGATTCTCA ATTGATCAAT ACCCAAAAAG TGGAAACCAA TGATGTGTCT
CCAGTTGTCT CAGATAATCT GCAAGTTGAG GAGCAAATTC CAAGTGAAGA AGCTGCTCTT
ATTGTTTTTG GAGGTGATAA ATCCGTAGAG TCTTGCAAAA AACCACCTGC TGTGTTTCAT
CTTATCCATC AGCTTCAGAA CGAAGACGTC ACTAGGCTTT CAAAAGAGGA GCGATACAAC
ATGGAGACGG AATTGTTGCA TTTTATGATG AAATTAAGAA GTGTTGATTA A
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| Protein sequence | MAARSKRSRL AKNARSKVKN EARSSREPSP NLSVASEAPT SHKSSRSSPK PTTTSSNSNR
SNGISADDSS NSSSSDLVND TPVSNIATNS PSKCNSASMS ASSSSSRSTS PAATASATVP
APEAPKEISP PPIVSKSAVV VPLHKLEYEV ENSNNDELSS SPIKRSSRGA HSIAKELSPC
RREMSPIPSS SPVRKKSVAF SDDIAYNDDS PAVVSSPDPR QTPRGSILKT YNMSFRNGSP
ADPSNTSLWT RSPFKNDDSY EPRNPVFWLS GTIVQLPPNS SELPRLVDGC VRVLQDPQFD
KKFEVYATIN HICKSNTNDT LLRIFSAPVS QMNSSPTKAA VTRFRTFQPD SNYIIALAAQ
IRRDIVVTET EIFNRNDIIK HELSTSQPLM RSDPFRIRII NQALKLINTF LMNEDLNGFV
PVEDVRWFYR HCCSILTTEN ISKALVSPYL IVIKDCRLIN KKKRMLFDNP ELPELMISSI
INMRSYPSST IVSERFLCFK NFANNFPNIM AKNINHWFEV FVLNVCSMAS PFSPKTLEIG
TNCLLEIAKV FLDNVSVQSS VTSLLSSKIS NDVKSLASEN GLDLDIDLIS SEVSVIDYIC
MKLEEMIETG RFKESMEIWV SITLLVGDGG SSFDQWEHLN KWLRVQKICF NSQYQSAKII
ALNSWKAVIY NVCHNDMDFM MKVVEPILKN PDVKQRQQML NACVKSRIRL LTHVFFSISS
PITSKEIAEN LNHLFMAILY SLLKPLLAKL ATKYLHIYWD KVIQPMILNF FFKKENSSLH
LHSLGLKVLL RLLKPTVPPK DRNNQVRCLA NDPISILEIP CLPCRWVYSK FDRIIPHIAL
VFQLDHLAVD QKVNLFISFL TAVKMVTKKE PRTTDQTFDI IESLPFVLEQ LFKTSSLSFD
SAYNLVINLN DTFKPATLVT RSISERTSES NLNIYYIILE NCISNLNKEQ LREIVQLIIA
SISDRRVLFF MLDLANLQKR LQIEELYILI VDFLNNRTII SNEPDLRLYG EFCQIIGSGA
EVFVKRLMQS VVSISKAEEL KQCLDYLQIS TWTKELFKYF VLLVHNAPNK YIQDYSIQKI
AIRFADNGTF VDLLRYLIDC EFYLEIDELS DEILDTAQHQ RGFFDFDFRK MWSGLLLKRL
EDKEDKNFDS LLSKSYIKLD IDIEQFIRDN WRNLPFLTSA WASKNDTSRV HGLDAYLEAQ
NDVMNKENFD TSMIITSTEE DSSETALAVL APDSSSIEKP AGSGQHTHDS REVLKELNTN
TISPLEKIDS TSAASSNEFQ SENVDSQSKN GKTSTKTSGK NTSKNSTKKA TSSSLMEFDI
HNFTAILNAK LEHAPAKKGN KKRKSSSKTS STEASPVEMA IIPVLPTEQI LSSLDDNCDI
SEVENDVLSQ VDDSDLVEDE SVTLNTSKEE EQVASPVAGL RRGRSRTKRK QEAQDTTEEL
GQHIESPVKK RKTVLAEVPN EKYDFENNTS PTLILDSNDV VVLQQVEVRT DVLNSLDLTS
SNEGSRQSEL GTFKSQSFNA HSTAIIKGEV HLSDSSQEIS EVEHNLLVGN VLHEKENVLS
VVPEAEEPES LPKVTSDFEN NIAQKTGDVE LITKDEIASV PLKNDSQLIN TQKVETNDVS
PVVSDNLQVE EQIPSEEAAL IVFGGDKSVE SCKKPPAVFH LIHQLQNEDV TRLSKEERYN
METELLHFMM KLRSVD
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