Gene PICST_28260 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_28260 
Symbol 
ID4851035 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009068 
Strand
Start bp777950 
End bp779050 
Gene Length1101 bp 
Protein Length366 aa 
Translation table 
GC content43% 
IMG OID640392743 
Productpredicted protein 
Protein accessionXP_001387378 
Protein GI126274021 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.295741 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCATGA TACAGTCGCG TATAGCGACA AGACTACTGT CGATAATAGT GCATCATCGG 
CAATTGACGT ATCTAAGCGA CCGGTGGGTG AAAGAGCCAT TTGAATTGGG CTACCCCAAC
TTCGATAGCA CTATAGCCCT GGAAAAGGCA AAAATCCATG ACATACTCTT TGGAGATAGC
AATAGAGGCG GTGATGAGTC AATAGATAAT CTCGAGCGTC CATTGAGCCA CTATCATTCT
AAACCAAAGG ATATTGTGGG CCAAGGATTG TACGCATTAG AAACGGGCTA CAAGACAAAA
AACCATTTGA AAATTCTCTG GAACAAGTTA GATGAGAAGG AAAAAACGAG ATTAACGTCC
AGTCCCAACA GAGAGCGATT ATATGATGAG CGAATCCGAG TGTGGAAGGG TTACGAAGTG
GTGGAGCATC TCAAGCGTAA CTCGGACAAG TACAACTGGA ATCCGTATCC TTTGCTGGGG
CTATTTCCAT GGGAGATAGT CAAGGATAAG CTCAGAAACC GGAAGCCGGT GATGGCTTTT
GAACAGGACT ACTACGATGT GTTGATCAAA GAAGCATTTA GTGGAAATAA AAGAAGAACG
GCATATCTGA TATTCTATGC CGATATCAAA AATCAACGCC GTTTGGGCAG TAGAGCCTGG
ATGACTGTAT CGAAGCTATA TGAACAATTA CCTCCAGAAA GAAGAGAGTA CTACGAAGAA
AGGGAACAGA GAAGAAAAGT TTTTATTCCC GTGCAAAAGG CTCCTGTGGG ACATCCGCCT
TTTCATGTCT TCTTTGATGA GTACATTGAA CAGAATTCGA CTTCTTCTAG ACCTCTTCTC
GGGGCTTCGA CAAGATGGGC AGCAATGACC GACGTAGAAA GACAAAACTA CACACCATTG
GATTCCAAGT ACCATCATAC AAGAGAGTAC AAGGAGAGAA AGCTCCTTCT AATGACCCAT
ATTGTCTTGG ACTACATCTA TCATGTCGGA GGTGTTGAAG GAGTTGATGG TAGCTACAGT
TGGGTTCAAG ACATGAAGGA GAGAACAGTT GGGTTTACGT ATCTCCACAA GATGTACACA
GATGATAAAT GGGATATGTA A
 
Protein sequence
MIMIQSRIAT RLLSIIVHHR QLTYLSDRWV KEPFELGYPN FDSTIALEKA KIHDILFGDS 
NRGGDESIDN LERPLSHYHS KPKDIVGQGL YALETGYKTK NHLKILWNKL DEKEKTRLTS
SPNRERLYDE RIRVWKGYEV VEHLKRNSDK YNWNPYPLLG LFPWEIVKDK LRNRKPVMAF
EQDYYDVLIK EAFSGNKRRT AYLIFYADIK NQRRLGSRAW MTVSKLYEQL PPERREYYEE
REQRRKVFIP VQKAPVGHPP FHVFFDEYIE QNSTSSRPLL GASTRWAAMT DVERQNYTPL
DSKYHHTREY KERKLLLMTH IVLDYIYHVG GVEGVDGSYS WVQDMKERTV GFTYLHKMYT
DDKWDM