Gene PICST_28253 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_28253 
SymbolYSR3 
ID4851029 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009068 
Strand
Start bp762593 
End bp764152 
Gene Length1560 bp 
Protein Length519 aa 
Translation table 
GC content43% 
IMG OID640392737 
ProductYeast Sphingolipid Resistance Gene 
Protein accessionXP_001387372 
Protein GI126274015 
COG category[I] Lipid transport and metabolism 
COG ID[COG0671] Membrane-associated phospholipid phosphatase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGTCCC ACAGGCAGAC AGAAACCTCT ACCATTTTGC GGAAATCTCC AGCTCCAGAT 
GAGGTTGTTG TGTCCGAAAA AGCCGAACTC TCACCCCAAG TCTCAAACCA TCTTAGCGAT
GCTGGAAACC AATCACAGGA GCACTACAAG TCCAGATTGT CACCTTTCAG ATACAAGTTG
AGGTCGATGC TACTTCCAGC TATTCGGGCT GAAACAAAAG TGTTGAATTC TTTGCAAAGT
TCACTTAGGC ATCCTTTGCT AGACTTTTAT TTTGCCTGGA CTGCTAACTT AGCTTCTCAC
ACTTTCTATG TCTTGATGCT TCCTCCACCC ATCTGGTTTG GTGCTGGCAA ATTGTGTCGT
GATCTTATTC ATGTTCTTGG GTTCGGTATC TATCTAAGTG GCGGGCTCAA AGACTATTTT
TGTTTGCCTC GCCCCAGATC TCCACCGTTA CATAGAATCA CCATGTCTTC GTACACAACT
CAGGAGTACG GGTTTCCTTC TAGCCACAGC GCCAATGCCA CCGCTGTATC TCTCATTTTG
TTTTCTAAAC TTGTAGAAAT ACGATCAAGC TTGTCTGCAG CCACTTTCTA CGGTCTTCTT
GCGGTGTTGT CCTTATATTA CATCTCTCTC ATTTTTGGCC GTTTGTACTG TGGCATGCAT
GGCTACTTGG ATATCATCAC AGGCTCGTTA ATTGGAGTAT TTTGCTTCTC CTTTAGATAC
TGGTACGGTG ATTGGTTCGA CAATTTGATG TTTGACAATA GTCTTAACGT TTGGATAACC
CCAGTGTTAA TTATCGCTGG CTATTTGTAT TTGATTCATA TCCATTCTGA ACCCATAGAC
GATTGTCCCT GTTTTGATGA CTCGGTGTCG TTCATAGGTG TTCTTATGGG CATTGACTTG
TCACACTATG TTGCACACAA GTCGCTGTAT TTTACCAGCA GAAACGAGTT CCAGGATCCA
ATCATGATCC ATTTCAACTA TGCCGAATTG GGTCCAGTCA AAAGTATTTT GAGATTCGTA
GTGGGAGTCA CTTTGGTAGT CATCTGGAAG TCAATATCCA AGCCTGTTGT ATTCACCATT
CTCCCACCTA TCTACAAGTT TGTTGGAATT TCGTTTCCTA GAAGAAACTA CATTGCTACA
GCTAGCACTA CGAAGTCGAA CAGACAGATC CGGTCTGCGT CTATTTCCAA CGTCGAAAAC
AATATTGGTG ACCTCAACAA CCTTATCAAG GGAATAACTG ACCACAGCAA ACGTGATGAA
ATGGGACCTG AGACTGAAAT CGACTACTAC GCTATTTTAG ACTACAACGA GGACAAGTAT
AAGAATAAAA ACAGGAAGAA AAACAAGAGG AAGAACAATA GAATTGACAA AGAAAAGGTG
TCAGATATCT CTGAAAATGA AGACGTCGAG CAGCAGCTTC AGTCATTTTT GAACAAGAGT
CAAGTATTCA AACCACGGTA CGATGTCGAG ACGATAGGGA GAACCTTGGT GTATGCTGGC
GTCAGTACCA CTGCCTTTTG GGGATTCAGC TTTGTGTCCG AGTTGCTAAA TCTAGCCTAG
 
Protein sequence
MSSHRQTETS TILRKSPAPD EVVVSEKAEL SPQVSNHLSD AGNQSQEHYK SRLSPFRYKL 
RSMLLPAIRA ETKVLNSLQS SLRHPLLDFY FAWTANLASH TFYVLMLPPP IWFGAGKLCR
DLIHVLGFGI YLSGGLKDYF CLPRPRSPPL HRITMSSYTT QEYGFPSSHS ANATAVSLIL
FSKLVEIRSS LSAATFYGLL AVLSLYYISL IFGRLYCGMH GYLDIITGSL IGVFCFSFRY
WYGDWFDNLM FDNSLNVWIT PVLIIAGYLY LIHIHSEPID DCPCFDDSVS FIGVLMGIDL
SHYVAHKSLY FTSRNEFQDP IMIHFNYAEL GPVKSILRFV VGVTLVVIWK SISKPVVFTI
LPPIYKFVGI SFPRRNYIAT ASTTKSNRQI RSASISNVEN NIGDLNNLIK GITDHSKRDE
MGPETEIDYY AILDYNEDKY KNKNRKKNKR KNNRIDKEKV SDISENEDVE QQLQSFLNKS
QVFKPRYDVE TIGRTLVYAG VSTTAFWGFS FVSELLNLA