Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_28253 |
Symbol | YSR3 |
ID | 4851029 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009068 |
Strand | + |
Start bp | 762593 |
End bp | 764152 |
Gene Length | 1560 bp |
Protein Length | 519 aa |
Translation table | |
GC content | 43% |
IMG OID | 640392737 |
Product | Yeast Sphingolipid Resistance Gene |
Protein accession | XP_001387372 |
Protein GI | 126274015 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0671] Membrane-associated phospholipid phosphatase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGTCCC ACAGGCAGAC AGAAACCTCT ACCATTTTGC GGAAATCTCC AGCTCCAGAT GAGGTTGTTG TGTCCGAAAA AGCCGAACTC TCACCCCAAG TCTCAAACCA TCTTAGCGAT GCTGGAAACC AATCACAGGA GCACTACAAG TCCAGATTGT CACCTTTCAG ATACAAGTTG AGGTCGATGC TACTTCCAGC TATTCGGGCT GAAACAAAAG TGTTGAATTC TTTGCAAAGT TCACTTAGGC ATCCTTTGCT AGACTTTTAT TTTGCCTGGA CTGCTAACTT AGCTTCTCAC ACTTTCTATG TCTTGATGCT TCCTCCACCC ATCTGGTTTG GTGCTGGCAA ATTGTGTCGT GATCTTATTC ATGTTCTTGG GTTCGGTATC TATCTAAGTG GCGGGCTCAA AGACTATTTT TGTTTGCCTC GCCCCAGATC TCCACCGTTA CATAGAATCA CCATGTCTTC GTACACAACT CAGGAGTACG GGTTTCCTTC TAGCCACAGC GCCAATGCCA CCGCTGTATC TCTCATTTTG TTTTCTAAAC TTGTAGAAAT ACGATCAAGC TTGTCTGCAG CCACTTTCTA CGGTCTTCTT GCGGTGTTGT CCTTATATTA CATCTCTCTC ATTTTTGGCC GTTTGTACTG TGGCATGCAT GGCTACTTGG ATATCATCAC AGGCTCGTTA ATTGGAGTAT TTTGCTTCTC CTTTAGATAC TGGTACGGTG ATTGGTTCGA CAATTTGATG TTTGACAATA GTCTTAACGT TTGGATAACC CCAGTGTTAA TTATCGCTGG CTATTTGTAT TTGATTCATA TCCATTCTGA ACCCATAGAC GATTGTCCCT GTTTTGATGA CTCGGTGTCG TTCATAGGTG TTCTTATGGG CATTGACTTG TCACACTATG TTGCACACAA GTCGCTGTAT TTTACCAGCA GAAACGAGTT CCAGGATCCA ATCATGATCC ATTTCAACTA TGCCGAATTG GGTCCAGTCA AAAGTATTTT GAGATTCGTA GTGGGAGTCA CTTTGGTAGT CATCTGGAAG TCAATATCCA AGCCTGTTGT ATTCACCATT CTCCCACCTA TCTACAAGTT TGTTGGAATT TCGTTTCCTA GAAGAAACTA CATTGCTACA GCTAGCACTA CGAAGTCGAA CAGACAGATC CGGTCTGCGT CTATTTCCAA CGTCGAAAAC AATATTGGTG ACCTCAACAA CCTTATCAAG GGAATAACTG ACCACAGCAA ACGTGATGAA ATGGGACCTG AGACTGAAAT CGACTACTAC GCTATTTTAG ACTACAACGA GGACAAGTAT AAGAATAAAA ACAGGAAGAA AAACAAGAGG AAGAACAATA GAATTGACAA AGAAAAGGTG TCAGATATCT CTGAAAATGA AGACGTCGAG CAGCAGCTTC AGTCATTTTT GAACAAGAGT CAAGTATTCA AACCACGGTA CGATGTCGAG ACGATAGGGA GAACCTTGGT GTATGCTGGC GTCAGTACCA CTGCCTTTTG GGGATTCAGC TTTGTGTCCG AGTTGCTAAA TCTAGCCTAG
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Protein sequence | MSSHRQTETS TILRKSPAPD EVVVSEKAEL SPQVSNHLSD AGNQSQEHYK SRLSPFRYKL RSMLLPAIRA ETKVLNSLQS SLRHPLLDFY FAWTANLASH TFYVLMLPPP IWFGAGKLCR DLIHVLGFGI YLSGGLKDYF CLPRPRSPPL HRITMSSYTT QEYGFPSSHS ANATAVSLIL FSKLVEIRSS LSAATFYGLL AVLSLYYISL IFGRLYCGMH GYLDIITGSL IGVFCFSFRY WYGDWFDNLM FDNSLNVWIT PVLIIAGYLY LIHIHSEPID DCPCFDDSVS FIGVLMGIDL SHYVAHKSLY FTSRNEFQDP IMIHFNYAEL GPVKSILRFV VGVTLVVIWK SISKPVVFTI LPPIYKFVGI SFPRRNYIAT ASTTKSNRQI RSASISNVEN NIGDLNNLIK GITDHSKRDE MGPETEIDYY AILDYNEDKY KNKNRKKNKR KNNRIDKEKV SDISENEDVE QQLQSFLNKS QVFKPRYDVE TIGRTLVYAG VSTTAFWGFS FVSELLNLA
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