| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_28179 |
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| Symbol | VPS53 |
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| ID | 4850958 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | - |
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| Start bp | 552342 |
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| End bp | 554675 |
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| Gene Length | 2334 bp |
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| Protein Length | 777 aa |
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| Translation table | |
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| GC content | 38% |
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| IMG OID | 640392666 |
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| Product | protein required for protein sorting at the late Golgi |
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| Protein accession | XP_001387747 |
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| Protein GI | 126273919 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.665656 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCACAT ACGAGTACGA CCCGGTGCCC GATCTCCGGC GGATTTTCAT ATCGCCGAAT
ACACTTGACG AGTTGCCGCA ATTGCTAGAC TACACGAATT CATACAAACA GAAACTTGAT
GAAGAAATCC AACAGGATAT CTCTGAATAC AACAGTAGTC GTCCCAACGG TCTCAATGAC
GACATTTGCA ATCTCGTAGA TCTCATTAAA GGAATCAAGC TGGACTCAGA TGCTACTCGT
CTGTCAATTG TAGCTATGAC CGGATCGATC CAGAACTTGG ATCAGTACAA GAAGAACTTG
GTATTGTCGA TGACGATTCT CAAACGACTT CAAATGCTTA TAAATGCCAA CAATACGCTC
ATACAGGTGA TGTCTTCACA CAATTACCAG GAGATTCTAC TGCTTTTTAG CGTTATTAAG
GAATTATTGG GCTTTTTCAA ACCATACAAA TCGATAGATG AAATCAATCA GTTGAACCTA
ATGGTTGTCA GTACCCAAAA TAAGCTCATA GATGATATCT TCATAGATTT TGAGGATTTT
TCGACACAGA GACTACAAGA CCGCGAGGAT CAGTTGATCT ACGGCTGTAA GATCTTAGAG
TTGATTGACT TGAAGTACAA GGACAAGCTC TTGAACTGGT TTTTCAACTT GCAACTCAAA
GATATAAGGT CCATCTTCAA CAACTTGGAT GAGGCAGGCT CCTTGGACAA CTTGAACCGC
AGATATATCT ACTTCAACAA CACTTTGAAG AGCGTCCAGG AAAGGTATCT TGAAATCTTC
CCCAAGGACT GGAAGGTCGA CTTGGAATTG AGTAAAATCT TTTGCTCCAT GACCAAGCAG
GATCTCATAA ATTTGCTCAC ATCGTCAAAT GTCAAATCTA ATACCCTCTT GGACAACTTG
ACAGCAACAT TAGATTTAGA AAAACTCTTG AACGATACCT TCAAAACGAG CGAGTTCACA
CTGATCATAT CCCTGGTGTT TGAACCTTAT TTGTTGATAT GGATAAATGA ACAGGACAAA
CTTCTCAGCT CCAAATTCGC AGAATTTATG TCGATTTCAC AATTGCCATC AGAATTAAAC
GAGAAGGACG ACTTCTTAAC GGTATTGAAG GTTAATAATG TTCCTAACAT CGCAAACTCT
TCAACTGAAT TGTTCAAGAA TTTCCAAAAG ATTCTTACCC TGATTTTGAA ACTCAGCAAT
GGTGAGATTT TGATAGAGTT GAGTAAATTA TTCATCAAGT ACTTGTATGA TTTCCACAAT
AAGATATTGG CACCGATGGT TCCAAAAAAC GATGACGAAT TGGGAGGTGG TATAGAGCCT
TTGAAGTACT TGACTATGTT ACTCAATACT GGGGATTATG TTATAAATAA TATTGACGAT
CTAGCTGACA AATTCAAAAC TTTAATCAAG GATCAATACG AGCAGAGGTT GCCTTCCTAC
GAAAACGTCA AAGACATATA CTTTAAGTTG ATCAACAAGT CCATTTCCAA TCTCTTGATC
AAGATCTCCA ATGATCTCAA GTTCAGCTGG AGACAATTCT TGAATATAAA CTGGTCCAAT
TTAGACACGA TTAATGATGT TTCCAGCTAT ATGTTGGAAT TGAAGAAGCA GATTATCACC
AATTTACAGG TGATTCTCCC TTTGATTATA AGAGAAAGTT ATATAAGAAA TTTCAACGAT
AAACTTGTTG AATTGCTTAT AACTACACTC AGCAACAACC TCAAGTTTGT AAAGCCTTTG
AATATGATTA GTTTGGAGCA GATCCTTCTT GACATTACCA ATCTCAAAGA CGTTTGTTTG
ACATTCCCAT TGTATTCCGA TCCTAATTAT TCCGAATCTA AGAATACAAC TAGTAGCTCA
CCATCATACC AGAAGTTTGT CAGCAACCAG TTCCACAGCT TTGAAAGCTT GTTGAAGGTC
TTGATGGTTC CTGAACTTCC AATAGAGAAT ATAATAGAGA GTTACTTTGA ATTGATAGGA
GACAAGTCTA TTCGCAACTT CATGAAGATT CTCAACTTGA AGAATATCGA CAAGTCGGCT
CAATCAAAGT ATATTGAAAA TTTCAAACTA CAGCTCACTC TAGATGATGG TACCTTGACA
AACCAAAACC AGTTACTATC TAATTTAGAA GACGAAGAAG AGTCGGGATC GGTTAGTATT
TCTCAGGTCA GCACACCTAC CCCAGACTTT AAGTCACCAA AATTGCTTCC TACGAAAATC
AACAACTTTG AGAAAAATCT CCGAGAATTT GCTATCACTG GAGAAAGCCA TGTCAATAAG
TTAAACGAGA ACTTCAAGAA CTTTGGTAAG TTCTTCAGAA AGGATAACGA CTAG
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| Protein sequence | MVTYEYDPVP DLRRIFISPN TLDELPQLLD YTNSYKQKLD EEIQQDISEY NSSRPNGLND
DICNLVDLIK GIKLDSDATR LSIVAMTGSI QNLDQYKKNL VLSMTILKRL QMLINANNTL
IQVMSSHNYQ EILLLFSVIK ELLGFFKPYK SIDEINQLNL MVVSTQNKLI DDIFIDFEDF
STQRLQDRED QLIYGCKILE LIDLKYKDKL LNWFFNLQLK DIRSIFNNLD EAGSLDNLNR
RYIYFNNTLK SVQERYLEIF PKDWKVDLEL SKIFCSMTKQ DLINLLTSSN VKSNTLLDNL
TATLDLEKLL NDTFKTSEFT LIISLVFEPY LLIWINEQDK LLSSKFAEFM SISQLPSELN
EKDDFLTVLK VNNVPNIANS STELFKNFQK ILTLILKLSN GEILIELSKL FIKYLYDFHN
KILAPMVPKN DDELGGGIEP LKYLTMLLNT GDYVINNIDD LADKFKTLIK DQYEQRLPSY
ENVKDIYFKL INKSISNLLI KISNDLKFSW RQFLNINWSN LDTINDVSSY MLELKKQIIT
NLQVILPLII RESYIRNFND KLVELLITTL SNNLKFVKPL NMISLEQILL DITNLKDVCL
TFPLYSDPNY SESKNTTSSS PSYQKFVSNQ FHSFESLLKV LMVPELPIEN IIESYFELIG
DKSIRNFMKI LNLKNIDKSA QSKYIENFKL QLTLDDGTLT NQNQLLSNLE DEEESGSVSI
SQVSTPTPDF KSPKLLPTKI NNFEKNLREF AITGESHVNK LNENFKNFGK FFRKDND
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