| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_28128 |
|---|
| Symbol | |
|---|
| ID | 4850908 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009068 |
|---|
| Strand | - |
|---|
| Start bp | 405717 |
|---|
| End bp | 406589 |
|---|
| Gene Length | 873 bp |
|---|
| Protein Length | 290 aa |
|---|
| Translation table | |
|---|
| GC content | 45% |
|---|
| IMG OID | 640392616 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001387721 |
|---|
| Protein GI | 126273869 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG5113] Ubiquitin fusion degradation protein 2 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.401737 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0860362 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGGTT TCTACAATCT ACTTTCCAAA TTCAGCCTAA CCGAGAGCGC CGCTCCCGTA
CCTGAAACGG CTCCCCGCCA AGTTGTAGGT ACCCCAGAAG AAATAGCGAA GTATGTCTAC
AGAGACATCC TTGGCATAAA GAACGAAATA CGATCATACA ACCAAGTCAC AGGAATCCTC
CACACCAACC TGCTATACTA CAAGCTCCTC AAGTTGATGG AGGAAGACCA TTATCGACAG
CTCGAAGAGT TGAAAAGAAG ATGCGAATAC CAAGTCAACA GCAGCGTCTA TCAGCGCAAG
CTCGTGGACC TCTATCGGTC CCAACTCAGC GAACTCTGTA ACCTCTTAGA TATCTTGAAG
AACAACTACA ACCATGGAAT TCACGAATCT CACATAATTA ACCACAGAGC TAGGGCTAAG
TCCGTGACGG CATCCCCTCC TAGAACAGGA TCCCATGGAG ATGGAAATAA CTCGATATTT
TCAGGACGAA GTAGAAGCTC GTCCATTTCC ACCCAGGCCT CACCCAAACA AACTATACCC
ATTAGCTTGG AGCCTGACAA AAATGACAAA AATGAAAGGC CCGCAGCGAA ATTTTCGCAG
CCATATTCTC AGGACGATAT CGAGCGCATA ACTAACGAAG CACCAGACCA TCTTTTGGAC
CCGATTTCGT TTCAATTGTT CAGTGATCCG GTTATAACTC CTAGCGGAAT TACTTATGAA
AAAGCAAACA TTGTTCGGTA TCTCAGAAAT AAAGGCAATC AGGATCCTCT CACTAGAGTG
CCTTTGCGCG AGGATCAGTT ATATCCCAAC CTCGTCCTAA AAGATACCGT TGACGAGTAT
ATCCAAAGCA AAGAGCAGGA TATCAAGGTG TAA
|
|---|
| Protein sequence | MEGFYNLLSK FSLTESAAPV PETAPRQVVG TPEEIAKYVY RDILGIKNEI RSYNQVTGIL
HTNLLYYKLL KLMEEDHYRQ LEELKRRCEY QVNSSVYQRK LVDLYRSQLS ELCNLLDILK
NNYNHGIHES HIINHRARAK SVTASPPRTG SHGDGNNSIF SGRSRSSSIS TQASPKQTIP
ISLEPDKNDK NERPAAKFSQ PYSQDDIERI TNEAPDHLLD PISFQLFSDP VITPSGITYE
KANIVRYLRN KGNQDPLTRV PLREDQLYPN LVLKDTVDEY IQSKEQDIKV
|
|---|
| |