| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_28094 |
|---|
| Symbol | GAT1 |
|---|
| ID | 4850876 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009068 |
|---|
| Strand | - |
|---|
| Start bp | 299893 |
|---|
| End bp | 302355 |
|---|
| Gene Length | 2463 bp |
|---|
| Protein Length | 820 aa |
|---|
| Translation table | |
|---|
| GC content | 44% |
|---|
| IMG OID | 640392584 |
|---|
| Product | activator of transcription of nitrogen-regulated genes |
|---|
| Protein accession | XP_001387707 |
|---|
| Protein GI | 126273822 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACATCA ATTCAAACTA CGACCCACCT GGATCTCCCA TGAACAGCCA TACGCCTTCG
ACGACGTCGA CGCTGGCAGC CGCACATACT TCCGCTTCGT CTTCGTACCA ACACAAGTTC
CATTTCCACC CAACCAGAAC TACGGCCTCT TCCACGGGAA GCAACCACCA CCACAACAAC
AATAATGCCA AACAGACAGT TTCGATAAAG GCCCTTTTGG CAGATGAAGT AGAGAACATC
GAGGGACTCT GGAGAATGTA CAACAAGGCT AAAGAGTCGC TACCATATAA GGCTCGTATG
GAAAACTTGA CCTGGAGAAT GATGTACATC ACCAATAAAC GACTAGAAGT CAAGAAAGAG
AGTATCCACA TTAAAATGGA ACACGAAGCT GAGATTTATG AAAACTCTAA TAATGTTCCT
GAGAATTCAG TATCGCCGTC GTTGGATCCA GCTGCTGAGG ACTTTGACTA TGTAGCTCAT
ATTCGAAAGA TGGGGCAGAA CAATCTAGAG AATGATGCTG GTGATTCTGA AATTGACATC
AATAATGACG ATTCTAACGA TTCAAACGAA GCTGTCAACT TCAGAAAGAG ACCTGCTGAC
TTCTCTCCCA TGATTACTAG CCACGCTGGA CCTGGTTCTA TCACAGGGAT TCACTCCAAC
TTGTCGATGT CGTTGAACCA GGAGAAGTTG AGGAGTCAGA TTCAAAATCA GAGTCAAAGT
GTACATCCTT TACGAACGAG TATCCAGCCC CATATCTTAC CTTCTCAGCA TCTTCCACTT
AATGACTTGG ACCATTCGGA TCACCGAAGC CAGTCAAACA GTATTCCAGA CCACCACAAC
GACCTTTACG ACCACAACCA TGATGACCAT GACCACCACC TTGAACTGCT TCATGTGGGG
CACCACGGCA TGGGAGAATC TTCAGCGTTT GAGTTTTCTC TCGATCCTTT GGCTTTTGAA
GGTCCGAACA ACAACTACAA CGATGACATT AACATGGACA TTCTTGCTAA TGGAACCAAT
AGTAGATTCG ATGATATGGA AGAATACCAT ACCAGAAACC CCAGTCTTCA TAGTCAAACT
ATTGGACCTA CCAGCATTCT CCATAACTAC AATGATCACC ACCACAGTAA TAGTAACAAC
AGCAATAGTA ATTCTCGCTA TGGACATTCT AACAGTGTTG TTTCGGTCGT AGCAACCCCT
ACAAATCTCT TGAGGCACGA CAATTCCATC ATCAGTTTAC CAGACTTCAG CCATAACTCG
GCTAGTCTTC ATCTGCAACA TCAGCAGCCT CCTTTGAGTC GCTCTATAAC ACAAACTCCT
ACTAATTTTT CACGGTCTTC GAACGGAAAC GACACTTTCC AATTCAACCC TTCTTTTTCT
GGCGTCCAGC AATCACCTGG TCTCGATTTT CCGACTCCTC AGCTCAACAA CCAGCCATTT
ACCGATTCTT ATTTTGACAG CATTGGATCT GGAAGCATTC CTAACAAGAA GGGTGCGTTT
CCCAAACAGT TCAGCTTCAC GGGTCTGGAA ACTGAGACTA CTCCACATTC TCTTCCTTCA
CAGACGACAC TTACCAGCTG GAGATCTTCT GTTGATAAGC CAGACAAGAT TTCCAAGCCT
TCATCGAAGA AGTCCAAGTC AGAAAAGTTC AAGAACTCTT CTGAAAAGTC GAAATCAAAG
AAGACATCGA GCCCCGCAGA AACTCCACGA TCTCTGGGCC AGCTCAAGAG TTCTCAATCG
ACAACTTCGT TGTCTTCGAT GCAGCCGGGA GTCTCTTGTA CTAATTGTCA CACCCAAACG
ACACCATTGT GGAGAAGAAA TCCACAGGGA CTACCCTTGT GTAATGCCTG TGGTCTTTTC
TTGAAGTTGC ATGGAGTCGT TCGTCCCTTA AGTTTGAAAA CAGATGTCAT CAAGAAAAGA
CAGAGAAATA CGAACCCCAA GAAGTCTATC AGTGGTTCTA GTAAAGACAA GGACGGGGAC
GACTTGAACC CTACCTCCAT TTGCAAAAGC GACACGAAGA TCATAAAAAG TCTCGTAGCA
GGAGGAAGTG ACACGTCCGA AACACTCGCA GTTGATGGCG AAGACTTGAA GTTTGAAACT
CCAATCTTGC TCTCTTCCAA GAAGAAACCA ACTAGAAACG CCTCTGTGAC TTCTTCTTTA
ACTATGACAC CAAAAAAGAC TTCTACGAAA GCGAAAAGTA CAAAAGCTTC GCCTAAGAAA
GTCTCTGTCA AGAAAGAAAA AAATGGCTTC GTTTTGAAGA CAGAAGGTGA AGATTACGTA
GATATAGACC ACGACAACGA GTTCATCAAT GTGCTCAACT CAGTAGACCA AAACTTACCA
CAAGCCCGTG GCAATCTGGA AAACCAGAAC GACCAACATG TCATGAACAG CAACGGGCAC
GATCTTGAAA ACGCTGGAGA ACAAAATGGT AACAACTGGG ACTGGTTAAG CATGACCCTA
TAG
|
|---|
| Protein sequence | MNINSNYDPP GSPMNSHTPS TTSTLAAAHT SASSSYQHKF HFHPTRTTAS STGSNHHHNN
NNAKQTVSIK ALLADEVENI EGLWRMYNKA KESLPYKARM ENLTWRMMYI TNKRLEVKKE
SIHIKMEHEA EIYENSNNVP ENSVSPSLDP AAEDFDYVAH IRKMGQNNLE NDAGDSEIDI
NNDDSNDSNE AVNFRKRPAD FSPMITSHAG PGSITGIHSN LSMSLNQEKL RSQIQNQSQS
VHPLRTSIQP HILPSQHLPL NDLDHSDHRS QSNSIPDHHN DLYDHNHDDH DHHLELLHVG
HHGMGESSAF EFSLDPLAFE GPNNNYNDDI NMDILANGTN SRFDDMEEYH TRNPSLHSQT
IGPTSILHNY NDHHHSNSNN SNSNSRYGHS NSVVSVVATP TNLLRHDNSI ISLPDFSHNS
ASLHLQHQQP PLSRSITQTP TNFSRSSNGN DTFQFNPSFS GVQQSPGLDF PTPQLNNQPF
TDSYFDSIGS GSIPNKKGAF PKQFSFTGLE TETTPHSLPS QTTLTSWRSS VDKPDKISKP
SSKKSKSEKF KNSSEKSKSK KTSSPAETPR SLGQLKSSQS TTSLSSMQPG VSCTNCHTQT
TPLWRRNPQG LPLCNACGLF LKLHGVVRPL SLKTDVIKKR QRNTNPKKSI SGSSKDKDGD
DLNPTSICKS DTKIIKSLVA GGSDTSETLA VDGEDLKFET PILLSSKKKP TRNASVTSSL
TMTPKKTSTK AKSTKASPKK VSVKKEKNGF VLKTEGEDYV DIDHDNEFIN VLNSVDQNLP
QARGNLENQN DQHVMNSNGH DLENAGEQNG NNWDWLSMTL
|
|---|
| |