| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_27988 |
|---|
| Symbol | VCC3.5 |
|---|
| ID | 4850780 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009068 |
|---|
| Strand | + |
|---|
| Start bp | 10549 |
|---|
| End bp | 14520 |
|---|
| Gene Length | 3972 bp |
|---|
| Protein Length | 1323 aa |
|---|
| Translation table | |
|---|
| GC content | 42% |
|---|
| IMG OID | 640392488 |
|---|
| Product | vesicle coat complex AP-3 |
|---|
| Protein accession | XP_001387244 |
|---|
| Protein GI | 126273508 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATACTC AAGCACTAGG CTATTCAATT CATAATCCAA TAACTTTGGA TCTGGACCTG
GATCTGGATC TGGACCAGAA CTTCGAAGAT GCTCTAGATG ACTTCAGCCA AGTAAATATC
AAATGTGAAA ATTCCAATCT CATTTCTACC GATGAGCATA TTTGGTCGAG CCCTCAATCA
TTTAGACAGA GTCTGCCATT CTCATCAATA CAAGCTACTC CATTGAGGAC AAATCTGTTC
AAACACGAAC TTGACTACTT GGCCAAAAAT TACTTTGTGT TTGTTGAGCC TCTAGGATAC
TTCTATCTGG AAAAAAGACA TTTTTTCATC TCTTCAGATT CAAAATATGC TACTTCCAAG
TTATATATAA AGTCAAAGCA AGGATTTCTT GACCTCATTA GCAAACTAAC AAAACAATCA
CCTTATTACA ACCAAATAGA AGGCGAGTCA AATATTGTGA ATGTGGCTAC TATTCCAAGC
CCTATCCCTG GCATTGAAAT AGAAGAATTT GCCTTCTGTG ATTCCTGTAA ATACACCAGC
TGTATTGGGC GCGTCCCAGT GAAATGTACC AGTCATGGAT ACATGAGAAG GGGAGAAGGC
TATAGAGTGG AACTGGGAGG TTTCTTTCTA TTGAAGGAAT TCCCACGTAT GCCTTCTTTA
CCTGATACTC CTCCACCAAG CACTCCAAAT ATGTATGATC GTAGTTCGAC CATACCTTGC
TCTTCTCCCA TCCGCCGCCG ATCTCGCTTC ACCAATAGAG ACTTGCAAGT CGAATTCAAG
GGCCCTCTTA TCACCGAAAT CCGTGTGAGA GAATCTGAGA ATATGACCGC TGATGCCTTT
TTGCAAAAAT ACGCCAATAT CAAATTCATT CCTGATGTGG GGTTATACTG GCACGAACAT
GAACGTGTGT TTTTGGATAG AAACTCTGAA ATTGTTCACA AATCATTGTC TTCTATCATT
GACAAATGCA AGTTTCTTGA AACACACATG CATGCAGTAA TGCTGAATTC CTACTACTGG
TATTTGTTAG CCAGTGCTAA TACGCTGTCC GAGGTACATG TATGTCTTGA ATGGTTGAAG
GAACCTCTAA GTGGCATAGA ACCTTCTAAG ATCCAGTACT GCCCTGATTG TATCAATTCG
GCTATCATCG ATGACCATTG TGATGTCGAT AACCTTAATG TTCTAACTGG AATGGGATAC
AGAATGGAGC TGGGGTCTAT TTTCTTATTA GCACTGGGTG GAGGAATGAC AGACATTTTG
GAAGATCAAC GAGAGGAGGC TCCCGATCTC GAATATTATG CCTCTGATTC TGGTGCTGTC
TTCCTGAGCG ATGAACAAGA AGCTGAGGGG TCAGTAGACT ATGCTTCTGA TATGGAAAAT
CTCACAGTAG ATGGTCAAGA AGGTGACGAA TTGACAGCAG TAAATGGAGA ATCTGAGTCG
GATACTCTCT TAGAAGATGA AGTTCAAGAA GGTGACTTTA GATCATTTGA AGATTCTTCT
GATTCGGATA ATCTCTTTGT AGATGATGCA CAAGAAGATG ATGAAGAAAT GATTGACATT
GCAATAGATA ATGATACTGA ATCGGATAAT GACGAATCAG ACATTTCAGC TTATGATACC
ACCGATGATG GTCTTGATAA CGAACGTGAT TCAGAAGAAA TTATATTATA TGATGAAGAT
CCTGTTAGAA TCTCCACTGT TAGTGGATGG TCTCAGCTAA AAAAGAAAGG TATTTGTCAA
ATTAGCAATC TTCTTTGGCT GAGAGGACAA CAACACTTCC TTGACATCAC CTCCAGGGCT
TTCAGATCGT TTCTCATGGG TACAGTGTCA AATGCACAAT ACACCCAGAT GTTGGAAGAT
GTCGAGGAAT GGGTCGATCT AATGCCTCAG TACTATAGAA TTCCAAAAGA TACCAAGGGT
AGAACATTTG AAATTCCCCT GCCCTTTTCA AGACTCCCTC CAAAAATACA TACCTACTGT
TCGGAATGTG GATTTGTAAT AGGATTCAAC GAGAACAATG AAAACTTGAG AAGCTCTTCC
CGTCATGCAA AGAATACTGG TCATGATAGA TTCATCAGTC GCCAAGGGTA TGCTATCAGA
GCCGCAACAG GATTCAATCT CTTGGTCATA TTTGGGTCTA ACGAAACAGT CAGTACATGT
GAATCGGAAG ATGGCGATTA TGATGATGAA GATATTGTTA TTCCTTCATT CGAAGAGGGA
CTGGGTTCAC CATTCACACC CCCTGAATTC ATAGTGGAGC CGTACTCCAC AGACGAAGAG
GCCAGCGACT ACGAACAAGA GCCTGAATCT CTTCCACCTC CATCTAAGGA AGAACAATAT
GAAGTGTCCG AACTATTGAA ACATTCCCAT GGGTTAGTTT ACGATCCTAT CTTCTACTTG
TACTACTACA TAACAGAAGA GCGGTATGTT GACGTGAATT CAATGTTTTT CAAAAACACA
TTGGAAGATA TTGGTGACCA CAAAAGCCGC ATTCGAAACT TGGTGGACCG TGTCATTAGC
ACTCAAATCA TTGACTCTCG AAAATTCGAG AAGAAAGTAA CCAGAGGTCA CATCCACTGG
GCCAAAGAGT TGTCCGAAGT AGCTCGCTGG AAGAAGCTAT GCTTTTGTAA ACAATGCTAT
CAGGTATTCA AAACAAAAAC TGCATTTTCC AAGCACAGGC GTGAATATGC GAACATGAGC
GAAAGAGAAC ATGCTGGTCA TGATATAAGT GCGGATTTTA AAGGATACCT TTTGGAGCGA
CCAAAGGGCC TCTACTATGC AATTGGGATT CCAGATGATG TTGCTCAAGC CGAAGCTGCT
GAAGCCGAAG CTACCGCTAC TGCTGAAGAA ATTGCAAGTC TGAAATCGCA ATGGGTTATG
GGTGGGCCTG GGTGGACGGT GGAAGAATAT GATATCAAAG TGCAATGGTT GGAGGGCAAG
CTAGGTATGC CTCCCGACCA ATTCTTGGCC AAGCACAACT ACTTACTAGT GAAGGAGGTT
GGTTTATACT ACGATTTCAC ACAGAAGTGG TTCCGAAGTA TAACACACAG GTTGCTGAGG
AAGGTCTTCT TCGGCGACTT AATACTGACG GTGAGGCGTG AGTTAATATC TTACATGCTC
CACAATATGG ATAGACAGTA TGAATACATG TTGGCACCCC GTCACGAGCA GCAAGTTGCT
ACTTTGGAAG CAGCAGTAAA ATATGACGGT CCAATGGTGG CGGTGGAAAG TGGCAACGAA
GAGCATCTAG ATTTCGAGTT GGTAGATAAT TGCATACAGC CAACTAAATA CTACATGTGT
CATGTGTGTA AGTTCATTGC CCACCACTCC AGCGTCTCCG CTCATATCAA ACAAGCCAAG
CACCAACGAG AAGAGGGACC TGAAAAACAT GTTGTGTATG GTTACAGTGT TCGGAATGTA
GAGGCTAAGA CAAACTACTT CCGAATTCAA CACAATCTAG CCAGTAGTTT TCACGAACCA
ACAGACAGCA CTGCTGACTC TCAAATTGTA GATCCGTTTT TATCCAGATA CAAAGCGCAT
GAGTATACAA AGTTCCGTTC ATTTTTGAAC ATGTCTAATG ACAAAAGATG GCCACGTTTG
GTACAATTGT GCAAGAAATA TGTAACCAAG AAAAGATTAG CTTTGAGCAT CGGATCTTCT
CTCTCAGCAC TCATCAAAAA CCCCCGGTTC TGTAGCACTC CAAACTCAGC CCTGCGATAC
GGACCCATGC TTGCCAGATT CCTCTTTGTT GCCATGAAAA TGTGCGAGTT GAAGGAACAC
AAAGCAATGG AAGAGTTTGA GCAAGTATTC TGTGCCAACA AAAAACAGGG ACTACGAAGA
TTTTTCGGTC AAATGACGAA ATTTGGTGCG TTCTGGTTGT TGTCTCCGGT ACTAGTGTTG
CAGGAAGACG ATTCAAACGC CATGGAAGAT GTCTTTATGA GCAGTCTAGT CTTCTTGATG
AAGGAGGAAT AG
|
|---|
| Protein sequence | MNTQALGYSI HNPITLDLDL DLDLDQNFED ALDDFSQVNI KCENSNLIST DEHIWSSPQS
FRQSLPFSSI QATPLRTNLF KHELDYLAKN YFVFVEPLGY FYLEKRHFFI SSDSKYATSK
LYIKSKQGFL DLISKLTKQS PYYNQIEGES NIVNVATIPS PIPGIEIEEF AFCDSCKYTS
CIGRVPVKCT SHGYMRRGEG YRVELGGFFL LKEFPRMPSL PDTPPPSTPN MYDRSSTIPC
SSPIRRRSRF TNRDLQVEFK GPLITEIRVR ESENMTADAF LQKYANIKFI PDVGLYWHEH
ERVFLDRNSE IVHKSLSSII DKCKFLETHM HAVMLNSYYW YLLASANTLS EVHVCLEWLK
EPLSGIEPSK IQYCPDCINS AIIDDHCDVD NLNVLTGMGY RMELGSIFLL ALGGGMTDIL
EDQREEAPDL EYYASDSGAV FLSDEQEAEG SVDYASDMEN LTVDGQEGDE LTAVNGESES
DTLLEDEVQE GDFRSFEDSS DSDNLFVDDA QEDDEEMIDI AIDNDTESDN DESDISAYDT
TDDGLDNERD SEEIILYDED PVRISTVSGW SQLKKKGICQ ISNLLWLRGQ QHFLDITSRA
FRSFLMGTVS NAQYTQMLED VEEWVDLMPQ YYRIPKDTKG RTFEIPLPFS RLPPKIHTYC
SECGFVIGFN ENNENLRSSS RHAKNTGHDR FISRQGYAIR AATGFNLLVI FGSNETVSTC
ESEDGDYDDE DIVIPSFEEG LGSPFTPPEF IVEPYSTDEE ASDYEQEPES LPPPSKEEQY
EVSELLKHSH GLVYDPIFYL YYYITEERYV DVNSMFFKNT LEDIGDHKSR IRNLVDRVIS
TQIIDSRKFE KKVTRGHIHW AKELSEVARW KKLCFCKQCY QVFKTKTAFS KHRREYANMS
EREHAGHDIS ADFKGYLLER PKGLYYAIGI PDDVAQAEAA EAEATATAEE IASLKSQWVM
GGPGWTVEEY DIKVQWLEGK LGMPPDQFLA KHNYLLVKEV GLYYDFTQKW FRSITHRLLR
KVFFGDLILT VRRELISYML HNMDRQYEYM LAPRHEQQVA TLEAAVKYDG PMVAVESGNE
EHLDFELVDN CIQPTKYYMC HVCKFIAHHS SVSAHIKQAK HQREEGPEKH VVYGYSVRNV
EAKTNYFRIQ HNLASSFHEP TDSTADSQIV DPFLSRYKAH EYTKFRSFLN MSNDKRWPRL
VQLCKKYVTK KRLALSIGSS LSALIKNPRF CSTPNSALRY GPMLARFLFV AMKMCELKEH
KAMEEFEQVF CANKKQGLRR FFGQMTKFGA FWLLSPVLVL QEDDSNAMED VFMSSLVFLM
KEE
|
|---|
| |