| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal_4379 |
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| Symbol | trmE |
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| ID | 4844752 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS155 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009052 |
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| Strand | - |
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| Start bp | 5123121 |
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| End bp | 5124560 |
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| Gene Length | 1440 bp |
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| Protein Length | 479 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640121657 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_001052709 |
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| Protein GI | 126176560 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000434128 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACACTAA AAGGCGGCTT AATTGGCCGC CTTTTCCTTT ACATATTTTA TGTAGATATT
AGTTTGGTGG GTATTTCCGT GACAACTGAC ACTATCGTGG CTCAAGCCAC CGCGCCCGGA
CGTGGCGGCG TTGGCATCAT TCGAATTTCA GGCGACAAGG CCAGTAATGT CGCTATGGCC
GTATTAGGTC ATCTTCCTAA AACCCGATAT GCCGATTATT GCGATTTTAA AAGTGCATCG
GGCCAAGTAA TAGACCAAGG CATAGCGCTG TTTTTTAAAG GACCGAATTC CTTTACTGGC
GAAGATGTCT TGGAACTTCA AGGCCACGGC GGCCAAATTG TCCTCGACAT GCTGATCAAA
CGTGTAATGG AAGTCGGTGG TATTCGTATA GCAAAACCAG GCGAGTTCAG CGAACAAGCC
TTTATGAACG ATAAACTCGA CTTAACCCAA GCCGAAGCCA TTGCCGACCT TATCGATGCC
ACCTGTGAGC AAGCCGCTAA AAGCGCGCTG CAATCACTAC AAGGTGAATT TTCTAAGGAA
GTCCACGAGC TGGTGGACCA AGTCACTAAC CTGCGTTTAT ACGTTGAAGC CGCAATTGAT
TTCCCCGATG AAGAAGTCGA CTTTTTAAGT GATGGCAAAA TTGCTAATGC ACTCTATAAA
ATCATCGACA AACTTGACCT AGTGCAAGCC AGTGCCAAGC AAGGTTCTAT TATTCGTGAA
GGGATGAAAG TGGTGATTGC CGGTCGTCCC AATGCCGGAA AATCGAGCTT ACTGAATGCG
TTAGCGGGTA AAGAGTCGGC CATTGTGACT GAAATTGCCG GTACAACACG CGACGTATTA
CGTGAACATA TCCATTTAGA TGGTATGCCG CTGCACATTA TTGATACCGC TGGCCTGCGT
GATACCACAG ATACGGTAGA ACAAATTGGT ATTGAACGCG CATGGAATGA AATAAACAGC
GCCGATCGCG TGCTATTTAT GGTGGACGGC ACGACAACCG CCGCCGTCGA TCCCCATGCG
ATTTGGCCTG ACTTTGTCGA TCGCCTGCCC TCCAATTTAG GTGTAACAGT GATCCGTAAT
AAAGCCGATC TCACGGGCGA AGACTTAATG ATGACCGAAG AACAAGGTTA TAGCGTCTAC
CGGATCTCGG CTAAAACAGG CTTAGGTGTT GAAGAATTAA AGCAACACTT GAAGTCACTT
ATGGGTTATC AGAGTAATCT CGAAGGTGGC TTTATCGCCC GTCGTCGTCA CTTAGAAGCC
CTTGAATTAG CCGCAGGACA CCTGCAATTA GGTAAAGAGC AGTTAGAGGT TTACCTTGCC
GGAGAGCTGC TAGCGGAAGA GCTACGCATG TGCCAATTAG CACTATCAGA GATCACTGGT
CGCTTCACTT CTGACGACCT ACTCGGCAAG ATTTTCAGCT CTTTCTGTAT TGGGAAGTAA
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| Protein sequence | MTLKGGLIGR LFLYIFYVDI SLVGISVTTD TIVAQATAPG RGGVGIIRIS GDKASNVAMA
VLGHLPKTRY ADYCDFKSAS GQVIDQGIAL FFKGPNSFTG EDVLELQGHG GQIVLDMLIK
RVMEVGGIRI AKPGEFSEQA FMNDKLDLTQ AEAIADLIDA TCEQAAKSAL QSLQGEFSKE
VHELVDQVTN LRLYVEAAID FPDEEVDFLS DGKIANALYK IIDKLDLVQA SAKQGSIIRE
GMKVVIAGRP NAGKSSLLNA LAGKESAIVT EIAGTTRDVL REHIHLDGMP LHIIDTAGLR
DTTDTVEQIG IERAWNEINS ADRVLFMVDG TTTAAVDPHA IWPDFVDRLP SNLGVTVIRN
KADLTGEDLM MTEEQGYSVY RISAKTGLGV EELKQHLKSL MGYQSNLEGG FIARRRHLEA
LELAAGHLQL GKEQLEVYLA GELLAEELRM CQLALSEITG RFTSDDLLGK IFSSFCIGK
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