Gene Sbal_4052 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbal_4052 
Symbol 
ID4844519 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS155 
KingdomBacteria 
Replicon accessionNC_009052 
Strand
Start bp4757997 
End bp4762523 
Gene Length4527 bp 
Protein Length1508 aa 
Translation table11 
GC content47% 
IMG OID640121318 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 
Protein accessionYP_001052387 
Protein GI126176238 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGGTAGGGG AAAATTTGAG TCAACTAATC CACAAGCTAG TGCTAGGCGC GCTTTGTATC 
CTAAGTTTGT GGGGGATCTC GTGCAATGGA TTAGCGCAAC CATTGAGCGC GGCTTTCACA
CAGCTTAAAT TTGAACATAT TCGCAGTGAA GATGGTCTCA ACCAGAATAC GATTACCAGC
CTGTTTATGG ACAGTGCTGG CATGTTGTGG ATTGGTACTC AAGATGGTTT GCATGCCTAC
AACGGTCATA ACTTCACCAT TTTTACCCAC TCCCCCAACG ATCCTAGCAG TATTTCAGAA
AGTTATGTCT CTGACATTAT TCAAGATTCA GAAGGCTACA TTTGGGTTTC CACATTCAGC
CAAGGGGTCA ATCGACTCGA TTTGAGTACA GGGACCTTTG AGCACTTTGG CCAAGAACAA
GGTCTGACCG ATCCCCGCAC CACCAAACTC AGCATAGTGG GTAATACACT CTGGATTGGT
ACTAAAGCAG GACTATTTTC CCTATCGACC AAAACCAAAC GCATTACCCA GGTCAGTTTA
GGTAACAGCG TCGAGCCCTA TATCACTAGC TTAGCCAATG TTGAAAACAC TTACCTGCTG
GCAGGTACCC AAGATAGCGG CACCTTTGCC GTCAGTGCGA ATACCATCAC TCGCTTAAAC
GTGCCGCAAA ATGTCACCAC CTATCAAATT CGGGCGAACT CGGCCTACTC GATCACTTTA
GCCCTTGGTG GACAACTATG GCACTACAAC TTGGCCTCGC AGCAGGGCGA AATCCTTTGG
CAGACTGACG ATAACGTGCC TTACATTAAG GATTTTATCC AAACCGAACA GGGTGACTTT
TGGGTCGTCG GGCCTGAAGC GGGTCTCATT CAACTCGAGA AAAATGATAA TTTATTCACA
GCGACCTACC ATAGATACGA TCCTAAGCGC ACTAACAGTA TCAGTGAAAA TAACATACTG
AGTTTACTAC AAGATCCCTT TGGCAACTTA TGGCTAGGCG CCAGTTATTC GGGATTAGAT
AAAATTAATA CCCGTCGCCA GTATTTTCAG CATATTTTCG AATACACCAC GGAGCTGTCG
CAACAGAGCA ACAATATTCG CACCTTATTC CGCAGCAAAG ATAATGTCCT TTGGATAGGC
ACTGAAGGCG CAGGGCTTAA GCGCATATTA GCCGATGGAA AATATGAGCA TTATACGGAG
CTATTTGCGA ACGCCTTAGG AATGCATCAA CGCAATTTAA ACCTCATCCT GCGAGATATT
GATCAAGACA AAGCTGGCGT GCTCTGGTTT GCCACTAACT ATGGACTCGG TCGGCTGTCG
CCAGAGGGCG ATTTCCAATT ACTCAAGGTC ACTACAAGTA CGGACCAAGG CTCTGAAGCC
AATTATATTC GCAATCTAGA CATTGATGAT CAAGGTCATC TCTGGGTAGC AACGACCCAT
GCCATCTATC GCAAAGCTAT AGATACCGAT GAGTTTACTT TTATCTCATT GGCAAATATT
GATCATTTCT ATCCGGCACA AAACCAGCTT TTAATCCTAA GAGCACACAA AGATACGCTT
TGGATAGGCA CACTCAATGG CCTGCTGAAA CTGGATATGA AAACGGGGAT AGGTAAATCT
TACTTCCATC AATCCTCTAA TAAGAAAAGC TTAATCAACA ACCGTGTCCG CGATATTTTG
GTGACTCAGG CGGGTGAGGT ATGGTTCGCC ACCCATGGCG GGATCAGTAA GTTATCTTCC
CAAGGTGCCG ATGCAGGCTT TACTCATTAC ACCCGCGAGC AGGGATTACC AAGCGATACC
ATCTACGCCT TACTTGAGGA CCAAGAACAT AACATTTGGT TTAGCAGCAA TGCCGGCATA
GGTAAACTTA ACCCTAAAAC CAATCGCATC ATCATATTCA ACGAACAAGA AGGTTTGCAG
GCACTGGAGT TTAACGGCGG TGTAAAACTT CAGGACAGCG ATGGCGATCT CTGGTTTGGC
GGTATTAACG GCATCAATCG TTTCAATCCC CAGTCGATTC CAGATCAACG ACCCGATGTT
AAAGTCGCGC TCACTGGCTA TAGCATTGCG GGAAAAGGCC ACACGATTCT CGATTTAAGC
CGCCCCCCTA GCATAGTGAT GAACTATAGC GATCAGCTAA TCAGTTTTGA GGTGACCTCA
TTGGATTTCA GCTACACGGG TAAAAACCGT TTCAGCTATT ATCTCGAAGG GTTTGATAAC
GAATGGCATG AGCTACCCAC AGGCAATGAA ATCACCTTCA CTAACATCAA TTCTGGCCAT
TACCGATTAC ATGTTCGTCA TGGGCTGCAA TACAACTCAG AAGGTGCCTA CGCGCTGCTT
GTCGATCTGA ATGTACAAGC CCCCTTGTAT CGCACTCAAT TCGCCTACGT CCTTTATTTC
TTACTCACTT TAGGACTGCT GGCTTGGGTC ATTCTCTGGC GTAAAAAGAA ACATCAAATA
CAACGAGAAT TTGAAACCAG CATTCGCGCC TCAGAGGAGC GGCTAAAACT GGCACTTTGG
GCGTCTGGCG ATGGCATGTG GGACTGGAAC ATACCCGAAA ACCAAGTCTA TCGTACCAAT
ATGGACTCTT CGATTCCCCA TTGGAACAGC AGCAATATTG TCCATGAGAG CATGCACTCT
GAAGACAGAG AGAGATTCAA ACTTGAGCTA AACGAGCACC TTCAAGGCCG CTCGCCTTTC
TTCGAAGCAG AGTACCGTGT CGAACGCTCA CCGGGTAATT GGGTGTGGAT TTTAGACCGT
GGCAAAGTGG TTGAAAAAGA TAGCCTAGAT AACCCAATCC GCATGACAGG GACTAACCGT
AATATTACCT CTCGTAAGCT GATTGAGAAC GAGCTGGTAT TGTCCTCGCA AGTGCTCAAC
AGCATGAATG AAGCGGTTGT CGTTGCGGGC CTAGATTATC GCATTCGCTC GGTTAACCCT
GCCTTTTGTG CCATTACTGG CTACACAGAG CGCCAAATCA CCGACAGGCA TTTCATTCAT
TTAGCCTTTG GGCGCCAACA GCGTGAATTG TTCAATACCA TTGAACAACA GCTACTGCGC
CATAAACATT GGGTCGGGGA GCTGTGGATC CGCAATAAAC AACGGCAGGC GATTTTAGTC
TGGCTTGAGA TCAACCAAGT TATCGATATT AAAGGTGAAA CCAGTCACTT CGTCGCAGTA
TTTACCGACA TCACACAGCG GAAAAAAGCC GAAGAAGATC TGCGTTTCCT CGCCAGTTTC
GACACCTTAA CGGGCCTGCC AAACCGAACC TTATTCCAAG ACAGGCTCAA TCACGCGATA
ACCCAAGCGC ATAGGGCGAA CAATATCGTC GCCTTACTGT TTTTAGATCT CGACCGCTTT
AAACATATCA ACGACTCCAT GGGTCACCAT GTCGGCGATT TACTGCTCAA AGCAGTCGCC
AGAAGACTGC AAAATGCAGT GCGTGATGGC GATACGGTCG CACGCCTAGG CGGTGATGAA
TTTACCATTA TTTTAGAAGG GGTAGCGAAA ACCAAAGCCG CCACTTTGAT CTCAGAAAAA
GTGCTCAGAG CATTCCAAAC GCCCTTCTTA TTGGACGATA AAACGCTAAC CATTTCGACC
TCCATCGGCA TCAGTCTCTA TCCAAACGAT GCTGATAATG CCGACTCGCT GATTAAATTT
GCCGATACAG CCATGTACCA CGCGAAATCG TCAGGTAGAA ATAACTTCCA GTTTTATACT
TCGAAATTAA ATGAAATTGC CACTCGCCAT GTGCAACTCG AAAGTGGGTT AAAAGAGGCA
ATTCAGCGCA ACGAATTGAG CTTAGTTTAT CAACCTAAGT TCTGTTTAAA GGATGGTTCA
CTCACTGGGA TAGAAGCGCT TTTACGTTGG CATCACACTG AACTTGGCCC CATTTCCCCC
GTCGAGTTTA TTCCGCTGGC GGAAGAAACC GGCATCATCA CTCAAATTGG TCATTGGGTG
ATCAATCAAG CCTGCCAGCA ATTAGCCGAA TGGAATAGCT TAGGATTCAA CGGTATCACT
GTCGCCGTTA ACCTATCGGC TCGCCAACTT AAGGCCGATA TTATCTCCAC TATAGAAGTT
GCCTTGGCAG TATCAGGTCT CCCGGCACAA TCCCTTGAGC TTGAACTGAC AGAGTCGATG
ATCATGGGCA ATCCGCAGGA GTCGGTCAGC ATTCTATCTA AACTCAAAGC CCTAGGCTTG
ACCATAGCGG TGGATGATTT TGGGACGGGT TATTCGAGCC TAAGTTATCT CAAACGCTTC
CCGATAGACA CGCTGAAAAT CGATCGAGAG TTCGTCAGAG ACATCACCAA TGATCCCGAC
GATGCGGCCA TCACCAGCGC CATTATCGCC CTCGCCCACA GTTTAGACCT CAACGTTGTC
GCCGAAGGTG TAGAGACCCA AGAACAACTC AACTTCTTGG CGATGCAGGG TTGCGATCAA
GTACAAGGTT TCTTACTCAG TAAACCCTTA AGTGCCGCAG ACTTTTTAAC TTTACTCAAG
AATCAATCTA AGCCACAGCC GATTTGA
 
Protein sequence
MVGENLSQLI HKLVLGALCI LSLWGISCNG LAQPLSAAFT QLKFEHIRSE DGLNQNTITS 
LFMDSAGMLW IGTQDGLHAY NGHNFTIFTH SPNDPSSISE SYVSDIIQDS EGYIWVSTFS
QGVNRLDLST GTFEHFGQEQ GLTDPRTTKL SIVGNTLWIG TKAGLFSLST KTKRITQVSL
GNSVEPYITS LANVENTYLL AGTQDSGTFA VSANTITRLN VPQNVTTYQI RANSAYSITL
ALGGQLWHYN LASQQGEILW QTDDNVPYIK DFIQTEQGDF WVVGPEAGLI QLEKNDNLFT
ATYHRYDPKR TNSISENNIL SLLQDPFGNL WLGASYSGLD KINTRRQYFQ HIFEYTTELS
QQSNNIRTLF RSKDNVLWIG TEGAGLKRIL ADGKYEHYTE LFANALGMHQ RNLNLILRDI
DQDKAGVLWF ATNYGLGRLS PEGDFQLLKV TTSTDQGSEA NYIRNLDIDD QGHLWVATTH
AIYRKAIDTD EFTFISLANI DHFYPAQNQL LILRAHKDTL WIGTLNGLLK LDMKTGIGKS
YFHQSSNKKS LINNRVRDIL VTQAGEVWFA THGGISKLSS QGADAGFTHY TREQGLPSDT
IYALLEDQEH NIWFSSNAGI GKLNPKTNRI IIFNEQEGLQ ALEFNGGVKL QDSDGDLWFG
GINGINRFNP QSIPDQRPDV KVALTGYSIA GKGHTILDLS RPPSIVMNYS DQLISFEVTS
LDFSYTGKNR FSYYLEGFDN EWHELPTGNE ITFTNINSGH YRLHVRHGLQ YNSEGAYALL
VDLNVQAPLY RTQFAYVLYF LLTLGLLAWV ILWRKKKHQI QREFETSIRA SEERLKLALW
ASGDGMWDWN IPENQVYRTN MDSSIPHWNS SNIVHESMHS EDRERFKLEL NEHLQGRSPF
FEAEYRVERS PGNWVWILDR GKVVEKDSLD NPIRMTGTNR NITSRKLIEN ELVLSSQVLN
SMNEAVVVAG LDYRIRSVNP AFCAITGYTE RQITDRHFIH LAFGRQQREL FNTIEQQLLR
HKHWVGELWI RNKQRQAILV WLEINQVIDI KGETSHFVAV FTDITQRKKA EEDLRFLASF
DTLTGLPNRT LFQDRLNHAI TQAHRANNIV ALLFLDLDRF KHINDSMGHH VGDLLLKAVA
RRLQNAVRDG DTVARLGGDE FTIILEGVAK TKAATLISEK VLRAFQTPFL LDDKTLTIST
SIGISLYPND ADNADSLIKF ADTAMYHAKS SGRNNFQFYT SKLNEIATRH VQLESGLKEA
IQRNELSLVY QPKFCLKDGS LTGIEALLRW HHTELGPISP VEFIPLAEET GIITQIGHWV
INQACQQLAE WNSLGFNGIT VAVNLSARQL KADIISTIEV ALAVSGLPAQ SLELELTESM
IMGNPQESVS ILSKLKALGL TIAVDDFGTG YSSLSYLKRF PIDTLKIDRE FVRDITNDPD
DAAITSAIIA LAHSLDLNVV AEGVETQEQL NFLAMQGCDQ VQGFLLSKPL SAADFLTLLK
NQSKPQPI