| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal_4006 |
|---|
| Symbol | |
|---|
| ID | 4845071 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS155 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009052 |
|---|
| Strand | + |
|---|
| Start bp | 4701908 |
|---|
| End bp | 4703290 |
|---|
| Gene Length | 1383 bp |
|---|
| Protein Length | 460 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640121269 |
|---|
| Product | HlyD family type I secretion membrane fusion protein |
|---|
| Protein accession | YP_001052342 |
|---|
| Protein GI | 126176193 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAAA ATTTAACCGC AAATGACTTA GACATGGTTG ATGATGTCTA CGGCGCCATG
ATGACGGACG CTCCCAGCGG ACACAGGTTA ATCATATGGG CACTTGCAGC TATGGTTGTG
TGTTTTTTAC TGTGGGCGGG TTTTGCTAAA TTAGACAAGG TCACCACTGG GACGGGGAAA
GTCATCCCCT CATCACAAGT CCAAGTCATC CAGAGTTTAG ATGGCGGCAT AATGCAAGAG
CTCTACGTTC AGGAAGGTGA AATGGTGACT AAAGGGCAAC CTTTAGTACG TATTGATGAT
ACCCGCTTCC GCTCCGACTA TGCTCAACAA GAGCAAGAAG TTTTTGGCTT AAAAACCAAT
GCTATTCGTA TGCGCGCCGA ACTCGACAGC ATTCTAATAT CAGACATGAC TTCTGACTGG
CGCGAACAAG TACTCATTAC TAAAAAGGCA TTGGTATTCC CGGAGAATAT TATTGCAGCG
GAACCAGCCT TAGTTAAAAG ACAACAAGAG GAATATAACG GACGCTTAGA TAACTTAAGT
AACCAGCTTG AGATCTTGGT ACGTCAAATT CAACAAAGAC AACAAGAAAT TGATGATCTC
GCGTCTAAAA CAACGACATT AACCACCAGT ATGCAGCTGA TCTCCCGTGA GCTTGAACTC
ACTCGGCCTT TAGCTAAAAA AGGTATCGTT CCTGAAGTTG AATTACTCAA ACTCGAACGC
ACGGTGAACG ATTTGCAAGG CGAATTGAAT TCAATGCGCT TACTGCGCCC TAAAGTCAAA
GCGGCGATGG ATGAAGCCAT CTTAAAACGC CGTGAAGCCG TATTCGTCTA TGCCGCCGAT
CTACGCGCGC AGCTCAATGA AACCCAAACC CGCCTTTCTC GCATGAATGA AGCACAGGTG
GGCGCACAAG ATAAAGTCAG CAAAGCAATT ATCACCTCAC CAGTCAATGG CACCATTAAA
ACCACTCACA TCAATACACT AGGCGGCGTT GTGCAACCTG GAGTCGATAT TATCGAGATA
GTGCCATCGG AAGATCAGTT ACTGATTGAA ACCAAAATCT TGCCTAAAGA TATCGCCTTC
TTACACCCAG GATTACCCGC AGTGGTAAAG ATTACCGCCT ATGACTTTAC TCGCTATGGC
GGCCTTAAAG GGACAGTTGA ACATATCAGT GCCGACACAT CCCAAGATGA AGAAGGCAAT
AGCTATTATC TCATCCGAGT CAGAACCGCA GAATCCAGTT TAACCAAAAA CGATGGCACA
CAGATGCCAA TTATCCCGGG AATGTTAACT TCGGTTGACG TTATCACGGG GCAAAGATCC
ATACTTGAGT ACATTTTAAA TCCAATTTTA AGGGCTAAGG ACACAGCGCT AAGAGAGCAC
TAA
|
|---|
| Protein sequence | MSKNLTANDL DMVDDVYGAM MTDAPSGHRL IIWALAAMVV CFLLWAGFAK LDKVTTGTGK
VIPSSQVQVI QSLDGGIMQE LYVQEGEMVT KGQPLVRIDD TRFRSDYAQQ EQEVFGLKTN
AIRMRAELDS ILISDMTSDW REQVLITKKA LVFPENIIAA EPALVKRQQE EYNGRLDNLS
NQLEILVRQI QQRQQEIDDL ASKTTTLTTS MQLISRELEL TRPLAKKGIV PEVELLKLER
TVNDLQGELN SMRLLRPKVK AAMDEAILKR REAVFVYAAD LRAQLNETQT RLSRMNEAQV
GAQDKVSKAI ITSPVNGTIK TTHINTLGGV VQPGVDIIEI VPSEDQLLIE TKILPKDIAF
LHPGLPAVVK ITAYDFTRYG GLKGTVEHIS ADTSQDEEGN SYYLIRVRTA ESSLTKNDGT
QMPIIPGMLT SVDVITGQRS ILEYILNPIL RAKDTALREH
|
|---|
| |