| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal_3996 |
|---|
| Symbol | |
|---|
| ID | 4845062 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS155 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009052 |
|---|
| Strand | - |
|---|
| Start bp | 4683802 |
|---|
| End bp | 4685046 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640121260 |
|---|
| Product | diaminopimelate decarboxylase |
|---|
| Protein accession | YP_001052333 |
|---|
| Protein GI | 126176184 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.950752 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGATCACT TTCTCTACCA ACAAAATGCC CTGCACGCCG AAGGCTGCCA GGTTGCCGAT
TTAGCTCAAA CCTATGGCAC ACCGCTGTAT ATCTATTCCC GCGCCACGCT AGAGCGCCAT
TGGCATGCTT TTAATAATGC CGTGGCAGAT CATCCACATT TGATTTGTTA CGCGGTTAAA
GCCAATGCGA ACTTGGCTGT ACTGAATGTG CTGGCACGTT TAGGCAGTGG TTTTGATATC
GTGTCGGGCG GTGAGTTAGC AAGAGTGATG GAAGCGGGCG GCGATCCCGC TAAAGTGGTG
TTCTCTGGCG TGGGTAAAAC TGCGGCTGAA ATGGAACAGG CACTTAATCT GGGCATTTAT
TGCTTTAACG TTGAATCGAG CGCTGAGCTT GAGCTGTTAA ATCTGGTCGC AGGTCGTTTA
GGTAAAGTCG CGCCTGTGTC CCTGCGGATT AATCCCGATG TGGATGCGGG AACCCATCCC
TATATTTCGA CTGGCCTTAA AGAAAACAAA TTCGGTATTG CTATGGATGA GGCTGAAATC
GTTTTCGCCC GTGCCCATGC GTTGCCACAT TTAAAAGTGA AAGGTGTCGA TTGCCATATC
GGCTCACAAC TGACTGAAAT CAAGCCATTC CTTGATGCGA TGGATCGTAT GCTCGCCTTG
ATCGACCGTT TGGCCGAGCA GGGTATCGTT ATTGAGCATT TCGATGTGGG TGGCGGTTTA
GGGGTGACCT ATGATGCCGA AACGCCGCCA CATCCTGATG TGTATGCTGC CGCCATATTG
GCGCGTTTGG GCGACCGTCA ACTGAAGCTT ATCTTCGAGC CGGGCCGTGC GATTGCCGCC
AATGCGGGGA TTTTTGTTAC TCAAGTGCTG TATCTTAAAG AAAACAGCGA CAAACGTTTT
GCGATTGTCG ATGGCGCGAT GAATGACTTG ATTCGTCCCG CACTTTACAG TGCATGGCAA
AATATTATCC CAGTCGTGCC AAGGGACTCA GAAGCCTATG AGTTTGATAT TGTTGGGCCA
GTGTGCGAAA CCGGTGACTT TTTAGGTAAA AATCGCCAGC TCGCGTTAGC CGCGGGTGAT
TTACTGGCGG TGCGTTCGAG TGGTGCCTAT GGTTTTGCCA TGGCCTCTAA CTACAACACT
CGTCCTCGTG CGGCTGAAGT GATGGTGGAT GGTGAGCAGG CTTTCTTAGT GCGTGAGCGA
GAAAAATTGT CTCAGCTCTG GCAAGGTGAG CAACTCCTGC CGTAA
|
|---|
| Protein sequence | MDHFLYQQNA LHAEGCQVAD LAQTYGTPLY IYSRATLERH WHAFNNAVAD HPHLICYAVK
ANANLAVLNV LARLGSGFDI VSGGELARVM EAGGDPAKVV FSGVGKTAAE MEQALNLGIY
CFNVESSAEL ELLNLVAGRL GKVAPVSLRI NPDVDAGTHP YISTGLKENK FGIAMDEAEI
VFARAHALPH LKVKGVDCHI GSQLTEIKPF LDAMDRMLAL IDRLAEQGIV IEHFDVGGGL
GVTYDAETPP HPDVYAAAIL ARLGDRQLKL IFEPGRAIAA NAGIFVTQVL YLKENSDKRF
AIVDGAMNDL IRPALYSAWQ NIIPVVPRDS EAYEFDIVGP VCETGDFLGK NRQLALAAGD
LLAVRSSGAY GFAMASNYNT RPRAAEVMVD GEQAFLVRER EKLSQLWQGE QLLP
|
|---|
| |