Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal_3979 |
Symbol | fliF |
ID | 4845025 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS155 |
Kingdom | Bacteria |
Replicon accession | NC_009052 |
Strand | - |
Start bp | 4667424 |
End bp | 4669100 |
Gene Length | 1677 bp |
Protein Length | 558 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640121243 |
Product | flagellar MS-ring protein |
Protein accession | YP_001052316 |
Protein GI | 126176167 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.697523 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTACCA CTTTTGTTCA ATCAGGTCAG GATATTACCG GGACTGAATC TTCGTCAGGA TTCATTGCTG GCATGACCCA AAAATGGCAT CGTTTTAACC GTGGTGATCG TCAGGTCATA GCATTAGCTT TACTCGCTGT GGTTGTAGCT AGTGTCATAG TGCTGATGTT ATGGACGGCA ACGGCGGGTT ACCGACCTTT ATATGGTAGC CAAGAAAATG TTGATACTTC TCAGGTTTTA AATGTTTTAG ATGCAGAAGG CATTGATTAT CGCCTCGATG CGAATTCTGG TGCTGTACTC GTTGCAGAAG AGCAAGTGGG TAATGCTCGT ATGATCTTGG CCGCCAAAGG CGTTAAAGCT AAGGTGCCTT CTGGCATGGA GGCTCTTGAT AATACCGCCC TCGGTACGAG CCAATTTATG GAGCAAGCCA AATATCGCAA TAGCTTAGAA GGTGAATTGG CTCGAACCAT AATGTCGTTA AAGTTAGTTC GTGCTGCAAG AGTTCATTTG GCGATACCTA AACAAACTCT GTTTATCCGT CAGGAGCCTG AACTGCCTAC CGCTTCTGTG ATGTTGCAGT TAGATCCCAA TACTCGACTC TCTGAGTCAC AGGTTGAGGC GATTGTTAAT TTAGTCGCAG GGAGTGTCAC TGGACTCACG GCAAGTAATA TCAAGGTTGT CGATCAAGAT GGCCGATATT TAAGTGAGAA CATTTCAGGT AATCAAGATC TTAGCCAGTC TAGGAATAAG CAATTACAGT ACACGCGTGA ACTTGAAAAT AGTCTAGTGG CCAATGCCTC TTCTATGCTC GAGCCTGTGC TTGGGCAAGA AAACTTCCAA GTACGGGTAA CGGCAAAAGT AAACTTTAAC CAAGTTGAAG AAACCAAGGA GTCACTCGAT CCACAAAATG TCGTGACTCA AGAACGTACC AGTGTCGATG ATTCAAGCAA TAGTATTGCC GCGGGTATTC CAGGAGCATT AAGTAATAAG CCACCCCAGG CAGGCAAAGC GGCAGCGGAT GACAAAACCC GTAATTTGAA ACAGGAAGAA AGTCGTCAAT ATGACGTGGG TCGCTCTGTA CGTCATGTCC GTTATCAACA AATGCAGCTC GAAAATCTCT CTGTCTCAGT GCTTATTAAT AGTGCGACAA GCCAAGGAGC ATTCAATGAT GAGGCTCAAC TCGCTAAGTT TGGCAATATG GTCAAGGATG CTATCGGTTT CTCGGCGGCG AGAGGTGATA GTTTTACCAT TAATGCCTTT GAGTTTACCC CAACTGTTAC AGCGGAATTT ACGCCGTCAC CTTGGTGGCA ATCAGAAAAT TACCAAGCTT ATTTACGCTA CATCATTGGC GGCATTCTCG GTTTCGGACT GATTTTGTTT GTATTAAGGC CGCTGGTTAA GCACTTGACT CGTACAGCGC AAATGACTGC TCCTAGGATT GAGCCCGTTG CATTAAGTGC AGCTCCTGCT GGCGCGTTAG ATGGACCTGT TGCCGATGCT GCATCAAATC AGCCACATCA GTTACCGAGT GCCGAGTGGC TAGGTAGTCA AGGTTTACCC GAACCTGGCT CACCTTTGAC CGTTAAAATG GAGCATTTGG CCTTGCTCGC AAATAAAGAA CCCGCGCGTG TTGCAGAAGT GATAGCTCAT TGGATAGGCG ATAAAGACGG TGAATAA
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Protein sequence | MSTTFVQSGQ DITGTESSSG FIAGMTQKWH RFNRGDRQVI ALALLAVVVA SVIVLMLWTA TAGYRPLYGS QENVDTSQVL NVLDAEGIDY RLDANSGAVL VAEEQVGNAR MILAAKGVKA KVPSGMEALD NTALGTSQFM EQAKYRNSLE GELARTIMSL KLVRAARVHL AIPKQTLFIR QEPELPTASV MLQLDPNTRL SESQVEAIVN LVAGSVTGLT ASNIKVVDQD GRYLSENISG NQDLSQSRNK QLQYTRELEN SLVANASSML EPVLGQENFQ VRVTAKVNFN QVEETKESLD PQNVVTQERT SVDDSSNSIA AGIPGALSNK PPQAGKAAAD DKTRNLKQEE SRQYDVGRSV RHVRYQQMQL ENLSVSVLIN SATSQGAFND EAQLAKFGNM VKDAIGFSAA RGDSFTINAF EFTPTVTAEF TPSPWWQSEN YQAYLRYIIG GILGFGLILF VLRPLVKHLT RTAQMTAPRI EPVALSAAPA GALDGPVADA ASNQPHQLPS AEWLGSQGLP EPGSPLTVKM EHLALLANKE PARVAEVIAH WIGDKDGE
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