| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal_3919 |
|---|
| Symbol | |
|---|
| ID | 4844140 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS155 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009052 |
|---|
| Strand | + |
|---|
| Start bp | 4613428 |
|---|
| End bp | 4615140 |
|---|
| Gene Length | 1713 bp |
|---|
| Protein Length | 570 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640121185 |
|---|
| Product | type IV-A pilus assembly ATPase PilB |
|---|
| Protein accession | YP_001052258 |
|---|
| Protein GI | 126176109 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | [TIGR02538] type IV-A pilus assembly ATPase PilB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00735332 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTACAA CTGGTCTTCA TTTAGGTTTA TCCACCTTAT TTATCCGTAA AGGTCTGCTA
AATGAAGAGC AGATGGCTAA CGCCATCACT AAATCCCGTC AAAACAAACA CGCCCTTGTA
AGCACTTTAG TTCAAAGTAA GCTGGTCTCT GCCCGTGCAA TAGCAGATCT TTGCTACGAA
GAATACGGCA CGCCACTACT CGATCTCAAT GAGTTTGATC TTGCTTCCAT TCCTGAGGAT
TTTCTCAATA AAAAGCTGAT TGAGAAACAC CGCTGCTTAC CCTTGTTTAA ACGTGGGAAT
CGCCTCTATA TAGGCACATC CGACCCGACC AATATTGCCG CCCTTGAAGA CTTCCAATTT
AGTGCAGGCC TGCATGCCGA AGCGATTCTA GTGGAGGAAG ATAAACTATC TAAAGCGCTG
GAAAAAATTC TCGAGGAAGA TATCAGTGGC CTAGATTTAG GCGGTATGGA TGAAGCGGCG
CTGGCGGCCA TAGAAATTAC TGACACAGAC AATCGCAGCG ATGTGTCAGC AGGCGAGGCC
AGTGACGACG CGCCTATTGT TATTTATATA AACAAAATTC TAACCGACGC CATTCGCAAA
GGCGCCTCGG ATTTACACTT TGAGCCCTAT GAAAAGCGCT ACCGCATTCG TTTTCGCATC
GACGGTATTC TCCACGAAGT CTCAGAGCCT CCTATTAGCC TCGCAGGCCG ATTATCTGCT
AGGTTAAAGG TAATGTCTAA GCTCGATATC GCCGAACGGC GCGTGCCACA AGATGGTCGC
ATTAAAATGA AATTGTCCCG TACTAAGTCC ATCGACTTTC GGGTAAGTAC CCTACCAACA
CTGTGGGGGG AAAAAATTGT AATGCGGATT TTGGACTCAT CCTCCGCACA ATTAGGCATT
GAAAAGCTCG GCTACGAGCC CGACCAAGAA AAGCTCTACC TTGAAATGCT AGCAAAACCC
CAAGGTATGA TTTTAGTGAC TGGCCCTACG GGCTCAGGTA AAACCGTCTC CCTTTACACT
GGGTTAAATA TTCTCAATAC CGAAGAGCGT AATATTTCCA CCGCTGAAGA TCCGGTTGAG
ATTAACCTTG AGGGCGTGAA TCAGGTTCAT ATTAATTTAA AAGCAGGGCT CACCTTCGCG
TCCGCTTTAC GTTCATTTCT ACGCCAAGAC CCCGATGTGG TTATGGTCGG GGAAATCCGT
GATCTTGAAA CCGCCGAAAT TGCTATTAAA GCGGCGCAAA CGGGTCACTT AGTTTTATCA
ACCTTGCATA CTAACTCGGC AGCCGAAACC TTAACCCGTT TAATCAATAT GGGTGTGCCT
GGCTACAACA TAGCCAGCTC TGTGAATCTG ATTATTGCCC AGCGCTTAGC CCGTCGTCTC
TGCCCTGAAT GCAAGCAAGC GGAAGTGATC CCCGAGCATG AATTATTGCG TTTAGGCTTT
GCCCAAGCAC AAATTACTCA AGGCTTTACC ACCTTTAAAC CTATTGGCTG CGAGCACTGC
TCTGCGGGCT ACAAAGGCCG AGTCGGTATT TATGAAGTGA TGAAAATGTC CGATGAAATA
GCCCGTACTA TCATGGAGGG CGGTAATTCT TTGCAAATTG CCTCCCAAGC TAAAGCACAA
GGAATGCGAG ATTTACGGCA ATCAGGGTTA TTGAAAGTGA TGCATGGCGT CACTAGCATT
GCAGAAGTCA ATCGCGTCAC CAGTTTTGGC TAA
|
|---|
| Protein sequence | MPTTGLHLGL STLFIRKGLL NEEQMANAIT KSRQNKHALV STLVQSKLVS ARAIADLCYE
EYGTPLLDLN EFDLASIPED FLNKKLIEKH RCLPLFKRGN RLYIGTSDPT NIAALEDFQF
SAGLHAEAIL VEEDKLSKAL EKILEEDISG LDLGGMDEAA LAAIEITDTD NRSDVSAGEA
SDDAPIVIYI NKILTDAIRK GASDLHFEPY EKRYRIRFRI DGILHEVSEP PISLAGRLSA
RLKVMSKLDI AERRVPQDGR IKMKLSRTKS IDFRVSTLPT LWGEKIVMRI LDSSSAQLGI
EKLGYEPDQE KLYLEMLAKP QGMILVTGPT GSGKTVSLYT GLNILNTEER NISTAEDPVE
INLEGVNQVH INLKAGLTFA SALRSFLRQD PDVVMVGEIR DLETAEIAIK AAQTGHLVLS
TLHTNSAAET LTRLINMGVP GYNIASSVNL IIAQRLARRL CPECKQAEVI PEHELLRLGF
AQAQITQGFT TFKPIGCEHC SAGYKGRVGI YEVMKMSDEI ARTIMEGGNS LQIASQAKAQ
GMRDLRQSGL LKVMHGVTSI AEVNRVTSFG
|
|---|
| |