Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal_3854 |
Symbol | |
ID | 4845790 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS155 |
Kingdom | Bacteria |
Replicon accession | NC_009052 |
Strand | - |
Start bp | 4527889 |
End bp | 4529064 |
Gene Length | 1176 bp |
Protein Length | 391 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640121118 |
Product | diaminopimelate decarboxylase |
Protein accession | YP_001052194 |
Protein GI | 126176045 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0019] Diaminopimelate decarboxylase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000000739123 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCCAAT TTCAATCTAT TGATGTTGCT GACTATTATG ACATGGACAC ATTCAAGCGT ATTGAAGCGT TTGCCAAAGA CAAAGCAACC CCGTTCGTAG TGATTGATAC CAGTATCATA GCGAAACAAT ACGATGACAT GGTTAATAGT TTTCCTTACG CCAACGTTTA TTATGCAGTT AAGGCAAACC CCGCGGCCGA GATCTTATCT TTACTTAAAG ATAAAGGGTC AAATTTTGAT ATTGCCTCAA TTTATGAACT AGATATGGTC ATGAATGTCG GCGTGACAAC CGACCGAGTC AGCTACGGCA ATACCATTAA AAAGCGTCAA GATGTACGTG CATTTTATGA GCGCGGCGTG CGTATGTATG CATCCGACTC AGAAGCCGAT CTGCGAATGA TCGCCGAAGA AGCACCGGGA TCGCGTATTT ACGTGCGCAT TTTGACCGAA GGTACAGACA CGGCTGATTG GCCGTTATCG CGTAAATTCG GCTGCCAAAA CGAAATGGCC TATGAGCTAT TAGTATTGGC GCAGGAATTG GGTTTAGAAC CTTTTGGTAT TTCGTTTCAC GTCGGTTCAC AGCAACGTGA CATAGGTGCT TGGGATTCTG CCATTGGTAA AGTGAAAAGC ATTTTCGACC GTCTGCGTGA TGAGCACAAT ATCACCTTGA AGATGATCAA CATGGGCGGC GGTTTCCCTG CTAACTATAT TGATAAAACC AATCAATTGG GTGTGTATGC CGAGCAGATT ACTCACTTCC TGAAGGAAGA TTTCGGTGAC GATTTACCGC AAATCATTTT GGAGCCAGGT CGTTCGTTGA TTTCTAACGC GGGGATTTTA GTGTCTGAAG TAGTACTGAT CAGTAAAAAA TCCTACACAG CGTTAGAGCG TTGGGTGTTT ACCGATGTGG GTAAATTCTC AGGCTTGATT GAAACGATGG ACGAGGCGAT TAAGTTCCCG ATTTATACTG ATCGTCAAGG CGAGCTGGAT AAATGCGTGA TTGCCGGCCC AACCTGCGAC AGTGCCGATA TCATGTATGA GCACTACAGC TACGGTTTAC CGAATGACTT AGCCATTGGT GACCGCATGT ATTGGTTAAC TGCTGGCGCT TATACGACGA CGTATTCGGC AGTGTGCTTT AACGGTTTCC CACCGCTGAA AGATTACTAT CTGTAA
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Protein sequence | MSQFQSIDVA DYYDMDTFKR IEAFAKDKAT PFVVIDTSII AKQYDDMVNS FPYANVYYAV KANPAAEILS LLKDKGSNFD IASIYELDMV MNVGVTTDRV SYGNTIKKRQ DVRAFYERGV RMYASDSEAD LRMIAEEAPG SRIYVRILTE GTDTADWPLS RKFGCQNEMA YELLVLAQEL GLEPFGISFH VGSQQRDIGA WDSAIGKVKS IFDRLRDEHN ITLKMINMGG GFPANYIDKT NQLGVYAEQI THFLKEDFGD DLPQIILEPG RSLISNAGIL VSEVVLISKK SYTALERWVF TDVGKFSGLI ETMDEAIKFP IYTDRQGELD KCVIAGPTCD SADIMYEHYS YGLPNDLAIG DRMYWLTAGA YTTTYSAVCF NGFPPLKDYY L
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