| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal_3804 |
|---|
| Symbol | |
|---|
| ID | 4841588 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS155 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009052 |
|---|
| Strand | + |
|---|
| Start bp | 4464810 |
|---|
| End bp | 4466951 |
|---|
| Gene Length | 2142 bp |
|---|
| Protein Length | 713 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640121068 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001052144 |
|---|
| Protein GI | 126175995 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGACT ATAAGATGGC TGCAAATTCT GCGTATTTAT CTCACCCGTT TAAAACTTCA
GTAATTTCCT CATCCCTCGC AATCGCCATG GGCTTATCGT TAGCACCGCA GGCAATGGCC
GATGACAGCG AGTTAGCCAA TATTGAACGC TTAGAAGTCC ACGGCCAACA GACCGAAAAC
CGCAACACGT TAGGTTCGGC TGAAAACCTG CTGAAAGGAC AAGGAGTAGA TTTCTCCGAA
GCGGGTGGCG TATCAGCTCT GCCTATTCTC AATGGCATGA TGGGCGATCG CATCAAAGTG
TTAGTTGATG GTGCGGACAT TACCGCTTCC TGCGCCAATC AAATGAATCC ACCACTGTCC
TATATTTCCG CTAATCAAAT CACCACAGCC GAAGTGATCG CGGGTGTATC GCCAGTCAGT
GCGGGTGGCG ACAATATCGC GGGTGTAATC AAGGTCAGCA GCCTTAATCC TAAATTTGGC
GAAAGCGATA GCATCAAGTG GAATCGCGGC GATATCTCAA CGGGATACCG CAGTGTGAGT
GATACCTTGT TACTGGGCAC CAATGCCACA GTTGCCAGCA AAAATATCAG CCTAAGCTAT
CAAGGCGCCT ATGAAGATGC CAACAGCTAT AAAGATGGCA ATGGCGATAA AGTCATCGAT
ACCTTGTACC GCGCCCAAAA CCACGCATTG ACCGCCGCAT GGCGCGATGA GACTCAACAA
GTTGCCATCA AACTAACCCA TCAAAATATT CCATTCCAAG GTTTTGCTAA CCAATACATG
GATATGACAG ATAACAAGAG TTACGGTGCC CTCGCCCGTT ATCAACTTAA ACTCGACGAT
GACGGCGAGT TCAGCGCCCA ATTCAATTGG CACGGCGTGA AGCACGAGAT GGGCTTTTTC
ACCCCAGAAA AAACCGGCAA GATGCCGATG AACACTGAAG GTGACGACTA CAGCTATCAA
CTGCACTGGC GCTTGCCAAT GGGCGATGAC AGCACCTTAC TGGTCGGCCA AGAATTCTAT
AGCTACCAGC TCGACGATGT GTGGCCTGCG GTGCCAGGCA CTATGATGGC GCCGAATGAT
TACATCAACA TCAACGATGG CGAACGTCGC CGCGCCGCCG TTTATGGCGA ATGGCAGCAA
GATTTGAGCC CAAGCTGGTG GTTATCGGCG GGTGTTCGCT TTGAGTATGT CACCACTAAT
ACAGGTGAAG TCCAAGCTTA TAGCAACATG CCTATGATGG GCATGCCCAA TGTCGACGCA
GAAGCGGCAA AAGCCTTTAA TGCGATGGAC AGAGAGCGTA ATGATGATCT GATCGACGCC
ACCTTACTGG CGCGCTATCA ATTATCGGCC AATCAACAAC TTGAGTTTGG CCTTGCCCGC
AAGAATCGAG CCCCCAATCT GTACGAGCGT TACAGCTGGG GTCGCGGCAC TATGGCAACC
ACTATGATAG GTTGGTATGG CGATGGTAAT GGTTATGTGG GTAATCCAGA TCTAAAGCCA
GAAACCGCCC ACACCCTGAG CGCAGCCTAC AAATATAACG GTGATAGCTG GCAAGTCTCG
ACCACAGCTT GGTACACAGC GGTGACTAAC TATATCGATG CCGAAGTGAT TGGTAGCTTC
AATCGCACTA GCTCAGCTGA TGGCAAACGC AATATTCTTC AATTCACTAA CTTAGATGCC
AATCTCTATG GTGCACGTTT TAATGCGCTC TATCAGTTTG CCGAAACCAG CACAGGTAAA
TGGCAAGTGT TAGGTAAAGT GAATGTGACC CGTGGTGAGC GAGATGAAGG CAATGAGCCT
TTATATCAAA TCAAGCCGCT ACAAACTGAG CTGGCACTGC AACATCAACT CGGTAACTGG
GAAAACAGCC TTTCATGGCA ATGGGTTGCG ACCAAAGATC GCGTGGATGA CCGCCGCCTT
GAAAATGAAA CCGATAGCTA CTCCTTGCTT AACTTAAACA GCAGCATGAA ATGGCAGGAT
CTGACTGTCA CCTTCGCGGT GAATAACCTA TTCGACAGCT ACTATGAGCT GCCACTGGGC
GGTGTGAGTG TGGCGGAATT TAAGGCCGAT AATACCAATG GCTTTAAGCA GATTGCCGGT
GCAGGCCGCT CGTTCGAACT CAGCGCAAGC TATGCGTTTT AA
|
|---|
| Protein sequence | MEDYKMAANS AYLSHPFKTS VISSSLAIAM GLSLAPQAMA DDSELANIER LEVHGQQTEN
RNTLGSAENL LKGQGVDFSE AGGVSALPIL NGMMGDRIKV LVDGADITAS CANQMNPPLS
YISANQITTA EVIAGVSPVS AGGDNIAGVI KVSSLNPKFG ESDSIKWNRG DISTGYRSVS
DTLLLGTNAT VASKNISLSY QGAYEDANSY KDGNGDKVID TLYRAQNHAL TAAWRDETQQ
VAIKLTHQNI PFQGFANQYM DMTDNKSYGA LARYQLKLDD DGEFSAQFNW HGVKHEMGFF
TPEKTGKMPM NTEGDDYSYQ LHWRLPMGDD STLLVGQEFY SYQLDDVWPA VPGTMMAPND
YININDGERR RAAVYGEWQQ DLSPSWWLSA GVRFEYVTTN TGEVQAYSNM PMMGMPNVDA
EAAKAFNAMD RERNDDLIDA TLLARYQLSA NQQLEFGLAR KNRAPNLYER YSWGRGTMAT
TMIGWYGDGN GYVGNPDLKP ETAHTLSAAY KYNGDSWQVS TTAWYTAVTN YIDAEVIGSF
NRTSSADGKR NILQFTNLDA NLYGARFNAL YQFAETSTGK WQVLGKVNVT RGERDEGNEP
LYQIKPLQTE LALQHQLGNW ENSLSWQWVA TKDRVDDRRL ENETDSYSLL NLNSSMKWQD
LTVTFAVNNL FDSYYELPLG GVSVAEFKAD NTNGFKQIAG AGRSFELSAS YAF
|
|---|
| |