| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal_3681 |
|---|
| Symbol | |
|---|
| ID | 4843804 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS155 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009052 |
|---|
| Strand | + |
|---|
| Start bp | 4299837 |
|---|
| End bp | 4301789 |
|---|
| Gene Length | 1953 bp |
|---|
| Protein Length | 650 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640120949 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with GAF sensor |
|---|
| Protein accession | YP_001052025 |
|---|
| Protein GI | 126175876 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCATACA ATTTCGCCAT TAATCAGTCT CAAAAAGATC GTTTATTCGC CGACATTGCT
ATCGACACAG ACAAAATCGT GGTTCCCCAA ATAATGGTTG ATAACTGGCA ACAAACCTTA
GATTTGCTCT CTGAATTGGT CGACACACCC GCGGCTTTAA TCATGCGTGT CCATCAAACC
GATATAGAGG TTTTTACCTC GAGCCGCACT CAGGGGAATC CCTATAAAAA ACACGACAAA
GACAGTTTAG GCCACGGACT TTACTGCGAG ACAGTGATAA AAGCAGGCAA GGAACTCCAC
ATTCCGAATG CCCTAAAAGA TAAAGACTGG GATAAAAATC CTGATATTAA ACTCGGCATG
ATTGCCTACT GTGGCTTACC TTTACGCTGG CCCGATAACA GCGCCTTTGG CACTATCTGC
ATGCTCGATA ACAAAGAGCA TAATTACAGC CAATCGTTTC GCAGCTTACT CGCTCGTTTT
CAAAATGGTA TAGAAGCCAA CCTAGTCACC CTCTATCAAC AGGCAAAGCT GCAACTGCAC
AACCAAGAGT TAGAGCAAAA AGTGCAACAA CGCACCCATG AACTGGCCGA ACTCAGTAGC
AAACTCATCA AAGAAATCGA AAATCGGACC TCCACCGAAA CCTCACTGGA ATACCATAAA
AGCTATGATC CACTGACGGG ATTACCGAAT CGCATCAATT TGATTAATAG CCTTTCGACT
ATGCTCGAAG AAGTGAATCG CAAGGAAAAG ATTTCAGTAC TCTATCTGGG GCTGCGTAAT
TTCAAGTCCA TCAACGACAG TTATGGCTAC CTGATTGGCG ATAAAATTCT CACCATTCTC
AGCCAACGTT TACAACACTA TGCCGATGAA AATACCTTCA TCGCCCGTAT TGCCGGCGCC
GAGTTTGTGA TTATTCAAGC CCATAAACCT TCGAACAACG AAACCAACAA ACTCATCAAT
AAAGTGCTTA GCTGCTGTAA TACCCCCTTT GGCGTGGCGG ATTTTGTGAT CACTATTCCA
TCGAGCATGG GTATAGCTCA AGCGCCCATC GATGGCATAG ATGCCGCCAT TCTGCTGCAA
AAAGCAGGGG CTGCGATGAC GATCAGCAAA GCCGATGGCT CAACTCACAG CTTCTTTAAT
CAAGATACTC AAGCGGCTTT GAATCTACGC TATCAACTGG AATCTCACTT AGTCGATGCA
TTGAACAAAA ACGAGTTAAG CCTTCATTAC CAACCCTTTA TTAACTTAAA AAACCAAAAG
GTGATAGGCG CCGAAGCCCT GCTGCGCTGG CACAATCCGA TCCTTGGCAA TGTCACCCCA
GACAGATTCA TCGCCTTAGC AGAACGTAAT GGACAGATTA TTGATATCGG TAATTTTGTA
TTGCATACCG CTCTGGCTCA GGCGGCAAAA TGGTGTCGCG AGCTAGACCA GGAGTTTAAA
ATCGCCATCA ATATCTCCCC TTTGCAAATG CGCAATCCCC GTTTTAGCGA GCACATAGCT
GACTTACTCA CCCTCTATCA ATTGCCACCG ACTGCCCTAG AGCTTGAAAT CACCGAAGGC
ATGCTGATGC AGGACGAGCA CATTGCCCAC AATGCCATCC AAAAGCTACA GGAACTCGGG
ATCCGCATCT CCTTAGATGA CTTTGGTACT GGCTATTCAT CCCTAAGTTA TCTACAAAAA
TACTCTTTCG ACACCTTAAA AATCGATCGC TGTTTTATCA ATAAACTCGA AGAAAACGAA
CAAGATAGGG AGCTCACTAA AGCGATTATT GCCATAGGCA AGAAACTGAA CTTAGTCGTG
ATCGCCGAAG GCGTGGAAAC CCTAGAACAA GATGCCTTTA TTCGTCACGA GGAATGCGAC
TTAGGCCAAG GCTACCTCTA CGGTAAACCC ATCACAGCAC ACGAGCCCCC TGTGTCAGGA
TTGTTGTCAC CCCTAAATAA TCATTATTTT TAA
|
|---|
| Protein sequence | MPYNFAINQS QKDRLFADIA IDTDKIVVPQ IMVDNWQQTL DLLSELVDTP AALIMRVHQT
DIEVFTSSRT QGNPYKKHDK DSLGHGLYCE TVIKAGKELH IPNALKDKDW DKNPDIKLGM
IAYCGLPLRW PDNSAFGTIC MLDNKEHNYS QSFRSLLARF QNGIEANLVT LYQQAKLQLH
NQELEQKVQQ RTHELAELSS KLIKEIENRT STETSLEYHK SYDPLTGLPN RINLINSLST
MLEEVNRKEK ISVLYLGLRN FKSINDSYGY LIGDKILTIL SQRLQHYADE NTFIARIAGA
EFVIIQAHKP SNNETNKLIN KVLSCCNTPF GVADFVITIP SSMGIAQAPI DGIDAAILLQ
KAGAAMTISK ADGSTHSFFN QDTQAALNLR YQLESHLVDA LNKNELSLHY QPFINLKNQK
VIGAEALLRW HNPILGNVTP DRFIALAERN GQIIDIGNFV LHTALAQAAK WCRELDQEFK
IAINISPLQM RNPRFSEHIA DLLTLYQLPP TALELEITEG MLMQDEHIAH NAIQKLQELG
IRISLDDFGT GYSSLSYLQK YSFDTLKIDR CFINKLEENE QDRELTKAII AIGKKLNLVV
IAEGVETLEQ DAFIRHEECD LGQGYLYGKP ITAHEPPVSG LLSPLNNHYF
|
|---|
| |