| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal_3648 |
|---|
| Symbol | |
|---|
| ID | 4844054 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS155 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009052 |
|---|
| Strand | - |
|---|
| Start bp | 4271344 |
|---|
| End bp | 4272000 |
|---|
| Gene Length | 657 bp |
|---|
| Protein Length | 218 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640120916 |
|---|
| Product | Sel1 domain-containing protein |
|---|
| Protein accession | YP_001051992 |
|---|
| Protein GI | 126175843 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00000102064 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGTAT TCACCCTATT GTCATTGAGA GTCGTTATGC TACGTACAGC ACTAGTTGCG
CTACTGCCCT TAGTATCTTC AATGTGCTTT GCTGAAACGC AGGCGGTGGA TATTTATAGC
CAAGATCAAT TGCTTGATTT GATCCGAAGT GATCAATATT TAGCGAAAGT GAAGCGTGAT
GATTGCCAGT TAGTCCAAGA CATTGAGGCG CGAGCCCAAG TCTTAAAACA GCCTTTATAT
CAATTCCTGT GGGGCGAAAT GCTCAATTAT GGAACCTGTG TAAAGGCAAA TCCTGTGAAG
GGTATTGCTT TGTTACGTGA CTCGGCCGAA CAAGGTAGCT CAGAAGCGAT GTTAAAGCTT
GCCGAGTATT ATCAGAGTGG GAAATTTGTC ATCCGCAATA AAGACAGAGC AGTGCATTAT
TTACTGCCTG CGGCTGCAAG TGGTGATTTA CCCGCTCGTA TGATGTTAGT GCGTTTATTC
GGTGAGGGTT ATGGTAGTCC TAGGGATTAC GAGATGGCCT ATCACTGGTT ATATAACGAT
GTATTTGCGG ACGAGGCGAC GAAGAAAAAA GCCTTGTCTT TACTGCAGGT GTTAGCAGCT
AAAATGCCCC CCAGTGCAGT GGCGCGAGCC CAGCAAGAAC AGTTGCGAAC CCGTTAA
|
|---|
| Protein sequence | MQVFTLLSLR VVMLRTALVA LLPLVSSMCF AETQAVDIYS QDQLLDLIRS DQYLAKVKRD
DCQLVQDIEA RAQVLKQPLY QFLWGEMLNY GTCVKANPVK GIALLRDSAE QGSSEAMLKL
AEYYQSGKFV IRNKDRAVHY LLPAAASGDL PARMMLVRLF GEGYGSPRDY EMAYHWLYND
VFADEATKKK ALSLLQVLAA KMPPSAVARA QQEQLRTR
|
|---|
| |