Gene Sbal_3250 details

Gene Information

• Locus tag: Sbal_3250
• Symbol: secD
• ID: 4844460
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella baltica OS155
• Kingdom: Bacteria
• Replicon accession: NC_009052
• Strand: -
• Start bp: 3810065
• End bp: 3811879
• Gene Length: 1815 bp
• Protein Length: 604 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 640120510
• Product: preprotein translocase subunit SecD
• Protein accession: YP_001051599
• Protein GI: 126175450
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.235226
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAAAGAA AACCTAATAA ACGGCTGCTA AATCACTATT CAGCTTGGAA ATATATAGTT 
CTTATCGTCA CCATCATAGT GATGTTATTC AGTGCCTTGC CTACATTTTA TGGTGAGGAT 
GCCGCGGTGC AAGTGGGCGC GAAGGCGGGG TTAACACTTA CGCCCGTAGC CCTTAGAGAT 
AAGCTGCAAG CTGAAGGCGT GACGGTAAAA CGCATCGACC AAAAGAATGG TGAAACCCTG 
ATTGTCCTCG ATGCGGATAA CCAACAAACC TTAGTCAAAA CCTTGGTTTC TTCTATGGTG 
ACAGAGCCCA AAGAGTTGAC TTTATCCCTT GCCAGTGCCG CGCCGAGTTG GTTGCAAAAC 
TTAGGTTTTC AGCCGATTAA ACTAGGGCTC GACTTACGTG GTGGGGTGCA GTTTCTACTC 
GATGTGGATG TTGACCCTGT GTATCAAACT CAGGGTGAGG CGTTAGTTGA TTCGCTACGT 
CAATTCATCC GTGAGCAAAA GATCCGTGGT GCCAGCGTCT ATTTGGACCA AACTAACCAG 
TTAAACCTGA CGCTGCCCGA TAATGACGCC CGCGCCGCCG TGCGTCAGAT GATGAAACAG 
TCCTATCCAA ATTGGCAATT ATCCAATACC GATGGCGCGG GTTTACAGAT TAAGTTGAGT 
CAAGAGGAAC AAACTAAACT GCGTAATTTG ACTGTGCAGC AAAACTTGCA AGTTATGCGC 
AGTCGTATTG AAGAACTTGG CATCACAGAA GCCTTAGTAC AGCGCCAAGG CGATCATCGA 
ATTCGGATTG AGTTGCCTGG CGTGCAAGAT CCTGCAGCCG CGAAAAACGT CATTGGTGCT 
ACAGCGAGTC TGGCTTTTTT CGAGGTGAAA GAGTCAGGCT CTGTGAATGC CATGGTGCTT 
AACGATAAGT CGGGTAAGCC TATTTATGTG AGCCGCACGC CTGTGCTGGG TGGCGATCAC 
ATTGTCGATG CCAGAGCGAG TTTAGGTGAG ATGGGTATGG CCGAGGTAAA CATTAACCTC 
GACCGTATCG GCGGGCAGAA AATGTCTGAG TTTTCCCGAA CCAATATTGG CAAACCTATG 
GCGACGTCTT ACAGCGAATA CAGCCGTGAT GAACAAGGTA AGGCTAAGCA AACTCAAGAG 
ATTATCAGCG TCGCGACCAT TCAATCCCAG CTTGGAGACC GCTTCCGCAT CACTGGCGCT 
GGCACCTATC AAGAAGCGCA GCAATTAGCC CTGTTACTGA GAGCGGGCTC TATGACGGCG 
CCAGTGACGA TTGTGGAAGA GCGTACCATT GGCCCGACGT TAGGCGCTGA AAACATTGAA 
AACGGTTTTG CTGCGCTTGG TCTAGGTATG GGTATTACCT TGTTGTTTAT GGCGCTTTGG 
TATCGCCGTC TCGGTTGGGT GGCGAATATC GCGCTGATCT CTAACATGGT GATCTTGTTT 
GGCCTACTGG CGCTTATCCC TGGTGCTGTG CTGACCTTAC CCGGTATTGC TGGCCTAGTG 
TTAACCGTGG GTATGGCTGT CGATACCAAC GTGCTGATTT TTGAGCGAAT AAAAGACAAG 
TTAAAAGAAG GTCGCAGTTT TGCGCTGGCA ATTGATACGG GGTTTGATAG TGCGTTTTCG 
ACCATTTTCG ACGCTAACTT CACCACTATG ATCACGGCTG TCGTGCTGTA TTCCATCGGT 
AATGGTCCCA TTCAAGGTTT CGCCTTGACC TTAGGTCTAG GTCTGTTGAC CAGCATGTTT 
ACCGGTATCT TTGCTTCAAG AGCCTTGATT AACTTAGTTT ATGGACGTGA TGCTAGTCGT 
CATGTGAGGG TATAA 

 

Protein sequence

MERKPNKRLL NHYSAWKYIV LIVTIIVMLF SALPTFYGED AAVQVGAKAG LTLTPVALRD 
KLQAEGVTVK RIDQKNGETL IVLDADNQQT LVKTLVSSMV TEPKELTLSL ASAAPSWLQN 
LGFQPIKLGL DLRGGVQFLL DVDVDPVYQT QGEALVDSLR QFIREQKIRG ASVYLDQTNQ 
LNLTLPDNDA RAAVRQMMKQ SYPNWQLSNT DGAGLQIKLS QEEQTKLRNL TVQQNLQVMR 
SRIEELGITE ALVQRQGDHR IRIELPGVQD PAAAKNVIGA TASLAFFEVK ESGSVNAMVL 
NDKSGKPIYV SRTPVLGGDH IVDARASLGE MGMAEVNINL DRIGGQKMSE FSRTNIGKPM 
ATSYSEYSRD EQGKAKQTQE IISVATIQSQ LGDRFRITGA GTYQEAQQLA LLLRAGSMTA 
PVTIVEERTI GPTLGAENIE NGFAALGLGM GITLLFMALW YRRLGWVANI ALISNMVILF 
GLLALIPGAV LTLPGIAGLV LTVGMAVDTN VLIFERIKDK LKEGRSFALA IDTGFDSAFS 
TIFDANFTTM ITAVVLYSIG NGPIQGFALT LGLGLLTSMF TGIFASRALI NLVYGRDASR 
HVRV