| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal_3160 |
|---|
| Symbol | |
|---|
| ID | 4845414 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS155 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009052 |
|---|
| Strand | - |
|---|
| Start bp | 3698746 |
|---|
| End bp | 3699900 |
|---|
| Gene Length | 1155 bp |
|---|
| Protein Length | 384 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640120419 |
|---|
| Product | riboflavin biosynthesis protein RibD |
|---|
| Protein accession | YP_001051510 |
|---|
| Protein GI | 126175361 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
|---|
| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.613531 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTTGA ACATAAGTTG GTCCGTACTC GATACCCAAA TGATGAGCCG CGCGATTCAA
TTGGCGCGCA AAGGTTTTTA TACCACCAGA CCCAATCCCA GTGTGGGCTG CGTTATTGTT
AAAGATAATC AGATCGTCGG CGAAGGTTAT CATCAAAAAG CGGGTGAGCC CCACGCCGAA
GTGCATGCGC TACGCATGGC TGGCGAACAC GCCCGTGGCG CAACGGCCTA TGTCACCTTA
GAGCCATGCA GCCATTATGG CCGCACGCCG CCCTGCGCCT TGGCGCTGAT CAATATTGGC
GTTAAACGTG TGGTGGTAGC GGTTGAAGAT CCTAATCCGC AAGTGGCTGG TCGCGGTATT
CAAATGCTGC GCGACGCCGG TATTGAAGTG GATGTGGGGT TACACCGCGA TGAAGCTTAT
GCCTTGAATT TAGGCTTTAT GAAGCGGATG GAATCAGGTT TACCCAGAGT TACAGTCAAA
TTAGCTGCGA GTCTCGATGG TAAAACCGCG CTGTCTAACG GTGTGTCTAA ATGGATTACT
GGGCCTGAAT CTCGCCGCGA CGTGCAGCGC TTACGCTTAC GTTCCTGCGC GTTGGTGACA
GGGATTGAAA CCATACTGGT GGACGATCCC TCGCTCAATG TGCGATATCA AGAACTTGGC
GGCATAAAAG ACAGCGTAAC CGAAGCGCAA TTACTGCAGC CATTAAGAGT CATACTCGAC
AGTCGCGCCC GTTTGCCGTT ATCGGCTGCC TGTTTGGCTG TCGTATCGCC GATACTCTTG
GTCTCGACCG TGGCTTATCC CGCAAAGTTT CAAGCACAAT TGCCCTCCCA TGTGAGTTGC
CTCGTGTTAC CTGCGATTGC AGGTCGCGTA TCCTTACCTG AACTATTAAG CTATTTAGGC
CAAAGCTGTA ATCACGTGCT AGTGGAAGCG GGTGCAACCT TAGCGGGCGC TTTTTTAGCG
CAGGGGCTGG CCGATGAATT AGTGCTGTAC CAAGCGATGA AAATCCTCGG TGGGCAAGGG
CGTAATCTAT TGCAGCTACC CGATTATCAA ACCATGGCGC AAATTCCTGC ATTAATGTTG
GTCGATGAGC GCAAATTAGG GCCAGATACC CGTTTAATCT TGAGCGTTAT GCTTGATACT
TCTTTAATTA ATTAA
|
|---|
| Protein sequence | MSLNISWSVL DTQMMSRAIQ LARKGFYTTR PNPSVGCVIV KDNQIVGEGY HQKAGEPHAE
VHALRMAGEH ARGATAYVTL EPCSHYGRTP PCALALINIG VKRVVVAVED PNPQVAGRGI
QMLRDAGIEV DVGLHRDEAY ALNLGFMKRM ESGLPRVTVK LAASLDGKTA LSNGVSKWIT
GPESRRDVQR LRLRSCALVT GIETILVDDP SLNVRYQELG GIKDSVTEAQ LLQPLRVILD
SRARLPLSAA CLAVVSPILL VSTVAYPAKF QAQLPSHVSC LVLPAIAGRV SLPELLSYLG
QSCNHVLVEA GATLAGAFLA QGLADELVLY QAMKILGGQG RNLLQLPDYQ TMAQIPALML
VDERKLGPDT RLILSVMLDT SLIN
|
|---|
| |