Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal_3119 |
Symbol | |
ID | 4845710 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS155 |
Kingdom | Bacteria |
Replicon accession | NC_009052 |
Strand | - |
Start bp | 3654982 |
End bp | 3655962 |
Gene Length | 981 bp |
Protein Length | 326 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 640120378 |
Product | RpoD family RNA polymerase sigma factor |
Protein accession | YP_001051469 |
Protein GI | 126175320 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGCCGCA TAAAAAGCAC TGCCGCAGAA GCACTAGTAG ATTTATCCGT AGACACTGTT GACTTCGATC TTGAAAAAGA AGAAGTTGCA TCCGATTTAG TTCAAGAGCT AGGAATAGAA CAACAGGTTC AAGATGACCT GCAAAAAAAT CTTGATGCCA CTCAACTTTA CCTTGGTGAG ATTGGTTTTT CCCCACTGCT TAGCGCAGAA GAAGAAGTTT ACTTTTCCCG TAAAGCCTTA AAAGGCTGTG CAAAATCCCG TAATCGCATG ATCGAAAGTA ATTTACGTCT GGTCGTAAAG ATTGCCCGTC GTTACAACAA TCGCGGCTTA GCACTGCTTG ATCTTATCGA AGAAGGCAAC TTAGGCTTAA TTCGTGCTGT TGAAAAGTTT GATCCAGAAA GAGGTTTCCG TTTTTCAACC TATGCGACTT GGTGGATCAG ACAGACCATT GAGCGCGCCA TTATGAATCA GACTCGTACA ATTCGTTTGC CTATTCATGT CGTTAAAGAA CTCAACGTTT ACTTGCGCAC CGCTCGCGAG TTAGCACAAA AACTCGATCA CGAACCAACG GCCGAAGAAA TTGCCGAAAA ACTACAAGTG TCGAGTGCAG ATGTCAGTCG TATGCTTAAG CTGAATGAGA AAATCACCTC TGTCGATACG CCTTTGTGGG GCGATAATGA CAAGGCGCTG CTGGATATTT TAGCCGATGA CGATAACGTT GGCCCTGACT ATAAAGTGCA AGATGAAGAT ATTTCTAATT CAGTGGTCAA ATGGCTCAAT GAGTTAAACA CTAAACAAAG AGAAGTGTTA GCCCGCCGTT TTGGTCTGTT AGGTTATGAA CCTTCTACAC TCGAAGATGT GGGTGCTGAA ATTGGTTTGA CCCGTGAACG TGTACGTCAA ATCCAAGTGG AAGCATTGAA ACGTTTACGC GACTTATTAG GATCTCAAGG TTTATCTGTT GAAGCATTGT TTAGAAATTA A
|
Protein sequence | MSRIKSTAAE ALVDLSVDTV DFDLEKEEVA SDLVQELGIE QQVQDDLQKN LDATQLYLGE IGFSPLLSAE EEVYFSRKAL KGCAKSRNRM IESNLRLVVK IARRYNNRGL ALLDLIEEGN LGLIRAVEKF DPERGFRFST YATWWIRQTI ERAIMNQTRT IRLPIHVVKE LNVYLRTARE LAQKLDHEPT AEEIAEKLQV SSADVSRMLK LNEKITSVDT PLWGDNDKAL LDILADDDNV GPDYKVQDED ISNSVVKWLN ELNTKQREVL ARRFGLLGYE PSTLEDVGAE IGLTRERVRQ IQVEALKRLR DLLGSQGLSV EALFRN
|
| |