| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal_1962 |
|---|
| Symbol | |
|---|
| ID | 4844272 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS155 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009052 |
|---|
| Strand | + |
|---|
| Start bp | 2274971 |
|---|
| End bp | 2275690 |
|---|
| Gene Length | 720 bp |
|---|
| Protein Length | 239 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640119182 |
|---|
| Product | YscJ/HrcJ family type III secretion apparatus lipoprotein |
|---|
| Protein accession | YP_001050335 |
|---|
| Protein GI | 126174186 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4669] Type III secretory pathway, lipoprotein EscJ |
|---|
| TIGRFAM ID | [TIGR02544] type III secretion apparatus lipoprotein, YscJ/HrcJ family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.945457 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATATT TTAAATGGTC AATATTGTTG CTCGTCTTCG CGTTGACTGG GTGCAAAGTC
GATCTCTATC GAGATCTTCC CCAAGATGAA GCGAATCAAA TGGTTGCCCT GTTGATGCTC
AATCACATAG ATGCCAGTGC GGAAGCAGAT CAAAAATCAG GCAATGTGTC TCTAAAAATA
GAGAAAGACC AATTTATCAA TGCCGTTGAA TTACTGAGGC AAAATGGCTT TCCTAAACCT
CATTATGCCA ATATCGAGGA TTTGTTTCCT TCGGGTCAGT TAGTGACTTC ACCCGCCCAA
GAGGAAGCGA AAATGGGTTA TCTAAAAGAG CAGCAACTCG AGCGTACCTT GTCGAGTATG
GATGGGGTGA TCAGCGCTAG AGTGTCTATT GCCGAACCTG CACCCGACAC CGGGCGTCAG
CTTGCACAAA CTAAGTCGGC CTCTGTATAC ATTAAATATT CACCTCAGGC TAACTTAACA
AATACGGAAA ATCAGATTAA GAGCTTAGTG CAGAATGCCG TTCCAGGACT GAGCTACGAC
AATATCAGTG TCTTTTTGCA AGCCGCAAGT TATCGCTATC AAGCCATTAC TCAGCCCACT
AGCAGTAGTT CATCCCAATT ATTAGCCCAG GTCGAAGCGT ACAAGTTGCC GTTAGTGATC
AGCTTATCGG GAATAATGCT ATTCAGCATT GGCGGTATGT GGTGGATGAG ACGCAAATAA
|
|---|
| Protein sequence | MKYFKWSILL LVFALTGCKV DLYRDLPQDE ANQMVALLML NHIDASAEAD QKSGNVSLKI
EKDQFINAVE LLRQNGFPKP HYANIEDLFP SGQLVTSPAQ EEAKMGYLKE QQLERTLSSM
DGVISARVSI AEPAPDTGRQ LAQTKSASVY IKYSPQANLT NTENQIKSLV QNAVPGLSYD
NISVFLQAAS YRYQAITQPT SSSSSQLLAQ VEAYKLPLVI SLSGIMLFSI GGMWWMRRK
|
|---|
| |