Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sbal_1517 |
Symbol | |
ID | 4841908 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS155 |
Kingdom | Bacteria |
Replicon accession | NC_009052 |
Strand | - |
Start bp | 1762814 |
End bp | 1766017 |
Gene Length | 3204 bp |
Protein Length | 1067 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640118735 |
Product | transcriptional regulator, CadC |
Protein accession | YP_001049902 |
Protein GI | 126173753 |
COG category | [K] Transcription |
COG ID | [COG3710] DNA-binding winged-HTH domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACATCG TTATGAGTGA CAGCACATTT TTCTTTGGTG AATGGCAAAT CAATCCCAGC GCCAATAGTC TGCTCCTTGG CAAACAAGTC AAACAACTTG AGCCCAAGGC GATGGATGTG CTGCTGTTTC TCTGTCAACG GGCGGGCGAA GTCGTCAGCA GTGATGAAAT AGTCAGCCAC TGCTGGCCGG GTGTTGATAC TGGCGACAAT CCACTACACA AAATTATCAA TCAGTTACGT AGAGCATTAG ACGATAGCGC CACCGATCCC ATCTATATAG AAACCATACG CAAACGCGGC TATCGCACCT TAGCCGAAGT GCGTTTTCCT ATCGGCCACG AAGCCACCGC CTGCCCGCAA AGTTGGCAAG GCGGCTCGCC CTTTCCGGGT CTGCAAGCCT ATAGCGCTAA CTATGCCGAG GTGTTTTTTG GTCGCAGTGA ACAAATCAGC ACTTTGCTTA ACCGTATCAG CCAGCAAATC ATCTATGGTC GTGCCTTCTG TCTGGTTTTA GGCCCAAGTG GCAGCGGTAA ATCCTCCCTG ATAAATGCCG GTGTTGTGCC CAATTTAATG AAGGGCGGCG GCTATAACGG CATTGGTGTC GCGTCATTCA GCAGCTTAGA TTTTGCCGAT GTGAGTAAAG GGCAACTGTT AACCGATCTT GCCAGCGCTA TGCTCGACTG GGAAATCAAC GACACGCCAG TATTCGAAGG CATGAGTGCC GATACTCTGG CGGTTCAACT TGTCGAAGAT ATCCAAGGCG TAATCAACCA GTGCACCCAA GCTCTCAATG TTCAGCCCTT TACTCAGCCG TTTTTTGCCT TGTTTATCGA CCGATTAGAA GTGTTGCTCT CATCACCGCT ATTTAGCGAC ACCGAGCGCA CGGTATTTGT TGAACTGCTG GAACAACTCG CCACCTCTAA GGCCGTGATT ATTATCAGTG CCTGTCGCAA CGATTTTTAT CCTTTACTTG TGGGCTACCC AAGCTTAATG GCCGGCAAAT CTCGCGGCGC CCACTTTGAC TTAGCGCCGC CGACACGCAC TGAACTGTTG CAAATGATCC GCCTGCCTGC GGTGGCCGCC AACTTAAGCT GGGAAGTTGA CAGCGAAACC GCGATGCCGC TCGATGAAAT GCTCTGCAGC GACGCCGCCA GTAACCCAGA TGCACTGCCC ATGTTGCAAT ACACGCTGCA AGCCTTGTAT TTACAGCGCA GCGCCGACGA TAAGTTATTA GTCTCGGTTT ATCATGCCCT TGGCGGTATT GAAGGGGCGA TTGGTAAAAA TGCCGAGCAA GCGATTTCCC ATTTAAGCGA TGCCGAAAAA GCCAGTCTGC CACGGATTTT ATCCCTGCTA GTCACCTTGC GCGAAGATGA AAAGTCCATC ACCAGCCGCA CCGCCCGCTG GTCGCAGCTG CAAAGCACCG CCGAAACCGC CCTAGTGCAA GCCATGGTCG ATAGCCGCTT ATTCGTGTCG CATCTGCAAA ATGGTGAACC CTGTTTTAGC ATCGCCCACG AAGCCCTGCT GCGCCGCTGG CCACGGGCGA CGGCGTGGAT TAGCGAACAT AGCGACAGTT TGAGCATTAA GAGTCGCCTA CAGCATCTTT CAACACGCTG GCTCAGCGAA GCCAAACACA GCGCCTATCT ACTCGCTGAA GGTAAACCTT TAAAAGAAGC CCAAAGCCTC AGCCAAAATC CGTTATTCGA TTTAGACGAT CCCGAAACCG CCTTTATCAC AGCCTCCACC AAACGCGCCA ATATGCTGCG CTGGACGAGG GGCTTAACCG TCACCCTATT ATGCGCCCTC ACCCTCACTT CCATTATCAT GAGTGTGCGC AGCATAGAAG CTGAAAAACT CGCCCTGCAA AAACGCCTCG CCGCCGAAGA TTTGCTCGGT TTCATGGTGG GCGACTTCGC CGACAAGATG CGCGGCATCG GCCGTATGGA CTTACTCGAT GGGATCAGTA ATAAAGCACT GGAATATTTC AGTGATTTTT CCAATAAAGA GGATGATGCA CACTTAAGCT TCGACGCCCG CTTCCAACAC GGCCAAACCT TAGAGGCCAT GGGCGAAGTG GCATATTCGC GCAATAAAAT TGATGAAGCT CGCAGCGCAT TACTCGCAGC GCAAGAAAAA ATGCTGCCAC TATTGAGTGT ACAGCCGGAA AACTTAGCCC TACTAAAAAC CTTAGGTGCC AATTCCTTTT GGTTAGGACA GCTTAAGTAT GATGTGAGTG ATTGGGCGGC AACGCGCCCA TTATTCGAGC AATATTTAAA ATACAGCCAA ACCATGTATA CCCTTGCGCC CGAAGATAAA GATGCGCTAA TGGAGCTGTC CTATGCCCAT AATACTTTGG GTTCTGTATC TATGAAGCAG CAGGAATTTG CAAAAGCACA GCAAGATTTT GAGGAATCAT TAAGACTTAA ATTGCTCGCC TTGGCAAAAG CACCTGAGGA TAGTCAGCTG ATTGCGGATG TGGCTAATGC TCGATCTTGG TTAGCGAGTG CGGCAGTGTC TTTGGGAGAC ATAAACACAG CAATATCAAT CCATAAAGAA CTGCAAAAAG AGTTAGAACT AGGTAATCAT ATAAAAAGTC CTTATTTGCT AGAAAAACTA AGCGGAAGCT ACCAAACTCT CGCAGATTTG TTTAGTTATA CTGAACATAA AGATGAAGCT CTTAATCAAG CCAAGTTAAA CCTATCAACT GTTGAAGAAA TACTAAGGCA AGATCCCAAA AATGACATAT GGAAAACATT GAGATATTAC TCTATTTTTC AAGTAATCAG ATTAAGTAAC TCTTCAACAG AGAAAAATCC AGAGAACAAA ACTAGCGCAC TAGAAGCTTC TATGTCTGCT GATAATAGTC TTAATGAAAT TCAAAAAAAG TCTGAAATAT GGGCAAACTT TTACTTATCA TCATCCTATT TCCTCATGAA CTCAGGTAAC TATAAAGATG CCAAAACCCA TGCAGAAAAA GCATACAAAT CGTATCTAAC GTTATCAAAA GATTTTTCAC AAAATATGAC TTTCGAACTC AACTTAGCAG AAAGTGAGTT ACTAATTTCC GAGAGCAATG AATACTCTTT TGAAATAAAT AATTCTTTTT GCCGCAAAGC AAATGAACGT ATAAAAAAAC TAATGAAATT AAGTAGAGAA CCAAAGTATA AATTCTTATT TGAGCGTTCT ATTAATTGTA TACATGTACA ATGA
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Protein sequence | MDIVMSDSTF FFGEWQINPS ANSLLLGKQV KQLEPKAMDV LLFLCQRAGE VVSSDEIVSH CWPGVDTGDN PLHKIINQLR RALDDSATDP IYIETIRKRG YRTLAEVRFP IGHEATACPQ SWQGGSPFPG LQAYSANYAE VFFGRSEQIS TLLNRISQQI IYGRAFCLVL GPSGSGKSSL INAGVVPNLM KGGGYNGIGV ASFSSLDFAD VSKGQLLTDL ASAMLDWEIN DTPVFEGMSA DTLAVQLVED IQGVINQCTQ ALNVQPFTQP FFALFIDRLE VLLSSPLFSD TERTVFVELL EQLATSKAVI IISACRNDFY PLLVGYPSLM AGKSRGAHFD LAPPTRTELL QMIRLPAVAA NLSWEVDSET AMPLDEMLCS DAASNPDALP MLQYTLQALY LQRSADDKLL VSVYHALGGI EGAIGKNAEQ AISHLSDAEK ASLPRILSLL VTLREDEKSI TSRTARWSQL QSTAETALVQ AMVDSRLFVS HLQNGEPCFS IAHEALLRRW PRATAWISEH SDSLSIKSRL QHLSTRWLSE AKHSAYLLAE GKPLKEAQSL SQNPLFDLDD PETAFITAST KRANMLRWTR GLTVTLLCAL TLTSIIMSVR SIEAEKLALQ KRLAAEDLLG FMVGDFADKM RGIGRMDLLD GISNKALEYF SDFSNKEDDA HLSFDARFQH GQTLEAMGEV AYSRNKIDEA RSALLAAQEK MLPLLSVQPE NLALLKTLGA NSFWLGQLKY DVSDWAATRP LFEQYLKYSQ TMYTLAPEDK DALMELSYAH NTLGSVSMKQ QEFAKAQQDF EESLRLKLLA LAKAPEDSQL IADVANARSW LASAAVSLGD INTAISIHKE LQKELELGNH IKSPYLLEKL SGSYQTLADL FSYTEHKDEA LNQAKLNLST VEEILRQDPK NDIWKTLRYY SIFQVIRLSN SSTEKNPENK TSALEASMSA DNSLNEIQKK SEIWANFYLS SSYFLMNSGN YKDAKTHAEK AYKSYLTLSK DFSQNMTFEL NLAESELLIS ESNEYSFEIN NSFCRKANER IKKLMKLSRE PKYKFLFERS INCIHVQ
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