| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal_1456 |
|---|
| Symbol | |
|---|
| ID | 4842899 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS155 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009052 |
|---|
| Strand | + |
|---|
| Start bp | 1687795 |
|---|
| End bp | 1688985 |
|---|
| Gene Length | 1191 bp |
|---|
| Protein Length | 396 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640118676 |
|---|
| Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| Protein accession | YP_001049843 |
|---|
| Protein GI | 126173694 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00000742828 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAATA TGGTGATTTT GGGTGCTACC GGCTCTATAG GTGCCAGTAC CTTAAGTGTG
ATCTCGGCTA ATCCATTCGC TTATAGCGTG TATGGATTAG TGGCCAACGC GAGCGTTGAT
AAGATGCTTG CACTCTGTGT GGCCCATAAA CCGAAAGTGG CGCATATGGT GGATGAAGCG
GCAGCAAAAC AGTTGCGTGC CGTTTTACCT GCGACGCTCA ATATCCAAGT CACCACAGGC
ATGAATGATT TACTCGGTTT AGTAACCGCT GCTGAAGTGG ATACCGTGAT GGCGGCGATT
GTTGGGGCTG CAGGGCTAGT ACCGACGCTT GAAGCCGTAA AGGCGGGTAA GCGGGTATTA
CTGGCCAACA AAGAAGCCTT AGTCATGTCA GGTGAACTGT TTATTGAGGC GACTAAGCGC
TCTGGCGCAG TGCTCTTGCC TGTTGACAGT GAGCATAATG CCATCTTCCA ATGTCTCCCC
CAGGAAGTGC AAGCCAACCT TGGCCGTTGT GACTTAGCGG CATCGGGTAT TTCCCATATT
CTGTTAACCG GTTCTGGCGG ACCTTTCCTG CGGTCGGATC TTGCGACACT GGCCGCCATG
ACGCCTGCCC AAGCCTGTAA ACATCCTAAT TGGTCCATGG GACCTAAAAT CTCCGTCGAC
TCCGCCACTA TGATGAATAA GGGCTTAGAG TTTATTGAGG CGCGTTGGTT GTTTAACACT
CAGGCTGAGC AACTTAAGGT GGTTATCCAT CCGCAAAGCG TGATCCACTC TATGGTGCAG
TACCGTGATG GTTCAGTTAT TGCCCAAATG GGTAACCCAG ATATGCGTAC GCCTATTGCC
CATTGCATGG CTTATCCGCA AAGAATTCAT TCTGGCGTTG AACCTTTAGA TTTTTTCAAA
GTCGGACAGT TAAGCTTTTA TGAACCTGAT TTTGAACGTT TCCCCTGTTT GGCTCTGGCA
ATGGACGCGT GTGCCCAAGG CCAAGAGGCG ACAACTGTGT TAAATGCAGC CAATGAGATT
GCCGTTGAAG CGTTTTTACA GGGACAAATT GGCTTTACTC AAATTGCAAA AGTGAACGAA
GCTTGTTTAG TGACTGTGCC TAAGTGCCCT ATGGGCAGCA TAGAAGATAT TTTAGCCTTA
GATGCGCAAA CCCGGGTCTA TGCGCGTGAG ACCTTAGCAA GCATCGCTTA G
|
|---|
| Protein sequence | MQNMVILGAT GSIGASTLSV ISANPFAYSV YGLVANASVD KMLALCVAHK PKVAHMVDEA
AAKQLRAVLP ATLNIQVTTG MNDLLGLVTA AEVDTVMAAI VGAAGLVPTL EAVKAGKRVL
LANKEALVMS GELFIEATKR SGAVLLPVDS EHNAIFQCLP QEVQANLGRC DLAASGISHI
LLTGSGGPFL RSDLATLAAM TPAQACKHPN WSMGPKISVD SATMMNKGLE FIEARWLFNT
QAEQLKVVIH PQSVIHSMVQ YRDGSVIAQM GNPDMRTPIA HCMAYPQRIH SGVEPLDFFK
VGQLSFYEPD FERFPCLALA MDACAQGQEA TTVLNAANEI AVEAFLQGQI GFTQIAKVNE
ACLVTVPKCP MGSIEDILAL DAQTRVYARE TLASIA
|
|---|
| |