| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal_1068 |
|---|
| Symbol | |
|---|
| ID | 4843043 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS155 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009052 |
|---|
| Strand | - |
|---|
| Start bp | 1228944 |
|---|
| End bp | 1229399 |
|---|
| Gene Length | 456 bp |
|---|
| Protein Length | 151 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 640118291 |
|---|
| Product | type IV pilus biogenesis protein, putative |
|---|
| Protein accession | YP_001049460 |
|---|
| Protein GI | 126173311 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4970] Tfp pilus assembly protein FimT |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.537139 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACACTC ATCAAAAAGG ATTTAGCCTA ATAGAACTTA TCACTACGCT ATCGATTTCA
ACCATCTTGT TTACTGTGGG TACGCCATCC TTTACGGATC TCAGCGATCA AATAAGAGCG
GATTCCAATA TCAGGACTAT CCAACAAACA CTCATGCTGG CTCGAAATAC GGCGATTAAT
TATGGATATA GAGTTACTGT TTGCCCACTC GTGGATGGAA AATGTACTCA AAATTGGCAA
AAAGGATTAA CTGTATTCAT TGATTCTGAT ACGGTAGAAA CCTTAGATGT TAACGATAAA
GTCATTCGTA TTATTGATGA ATTTGATACA AAAGACTTTT TAAAATACAA CAAAAGCTCG
ATAAAATTTC AACCCGATGG ATTGGCTTCA GGAAGTAATG GTTATAGCGC GTCAATTAGC
TTGGCCGATC CAGCGACAAT TAACTTGGCC GGTTGA
|
|---|
| Protein sequence | MNTHQKGFSL IELITTLSIS TILFTVGTPS FTDLSDQIRA DSNIRTIQQT LMLARNTAIN
YGYRVTVCPL VDGKCTQNWQ KGLTVFIDSD TVETLDVNDK VIRIIDEFDT KDFLKYNKSS
IKFQPDGLAS GSNGYSASIS LADPATINLA G
|
|---|
| |