| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal_0553 |
|---|
| Symbol | |
|---|
| ID | 4844943 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS155 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009052 |
|---|
| Strand | + |
|---|
| Start bp | 625434 |
|---|
| End bp | 626918 |
|---|
| Gene Length | 1485 bp |
|---|
| Protein Length | 494 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640117776 |
|---|
| Product | carbohydrate kinase, YjeF related protein |
|---|
| Protein accession | YP_001048951 |
|---|
| Protein GI | 126172802 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[S] Function unknown |
|---|
| COG ID | [COG0062] Uncharacterized conserved protein
[COG0063] Predicted sugar kinase |
|---|
| TIGRFAM ID | [TIGR00196] yjeF C-terminal region, hydroxyethylthiazole kinase-related
[TIGR00197] yjeF N-terminal region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000595011 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACAAG ATCTATCGCA ATTCCCCAAG GCCTTATTTA CCCAAGCACA AGTTCGCCAA
GCTGAACTGA GTGCTGTGTC ACAGGGAGCC TCTAGCCTCT ATGAATTGGT CGAGCGTGCT
GGCGCGGCGG CTTTTGAATG TTTAACAAAA CATAACCCTA ATGCCTCTTC TGTGTTTTTC
CTCGCTGGCA GCGGTAACAA TGGTGCCGAT GCCTTAGTGT GCGCCCGTCT AGCCCGTGCA
AGTGGTATGG CCGTTTCAGT GATGATGACG TCAGTGGCAG GCACGCCTGA GTGTCAGCAA
GCATTGGCCC ATTATCTTAA AGACGGCGGA GAGTTACTGC CGAAAGCCGT TGCGCCTATT
CTTGCGGCCA AGATCATCGT CGATGGTTTA CTCGGCACAG GTGTGCGAGA TGCTGTGCGC
GACGATATGG CTGAGTATAT TTGCGCCATC AATGACAATG CAGCTTGGGT ATTGAGCCTT
GATTTACCGT CTGGAGTGAT TGCCGATACC GGCGCTGTGG CGGGTGTTGC TGTGATGGCG
GATGTCACCT TGTGTTTTGG TGGCTGGAAG CAAGGTTTGT TAACGGGTAA GGCGCGGCAT
TACAGCGGCG AACTTGAATT TGCCGCTTTA GGATTAACAC CTTTCTTCGC TGAAGCGAGT
GCACAAAGAG TCGGAAAAGA GACGCTTAAG GATTATTTTG CCGCCAGAGC GCGCGATAGC
CATAAAGGGC AGTCAGGTAA GGCCACTGTT ATCGGCGGTG ATATGGGCAT GGCTGGCGCC
GTGCGACTGG CAAGTGAGGC ATGTTTGCGT GCCGGTGCAG GATTAGTCAC AGTGATCAGT
CGACCTGATC ATCAATTGAC GGTGAATGTC TCTCGTCCGG AATTGATGTT CTGGGGTTGT
GACTTAGTCG ATATGGAAGT GTATCTGCGC CTTGGTTGGG CGCAGGTTAT CGTACTTGGC
CCTGGTTTAG GTAAGCATGA CTGGGGCTAT AACTTGTTTA AAGCCGTGGG CTTAAGTGAT
AAACCCTGTG TTTTGGATGC CGATGCCTTA AATCTATTGA GCAATGAACC GCGCCGGCAA
ACCAATTGGG TGCTAACACC GCATCCGGGT GAGGCTGCGC GTTTACTCGG CTGCTCTGTG
GCAGAAATTG AACAGGATAG GTTTGCGGCT GTACGGGCTA TACAGCAAAA GTACGGCGGT
GTTGTGTTGC TAAAAGGCGC GGGAACGGTC ATTTTTGATG GCAAACAAAT GATTGTTGCA
CCTGTCGGTA ATCCTGGGCT TGCCAGTGGT GGGTGTGGCG ATGTGTTATC TGGTATTATA
GGCGCGCTCA TGGCTCAAGG AATGGATAAC ATGCAGGCGA CTGTGCTGGG TGTTGTTGTA
CATGGTTGCG CCGCCGATCT TGCGGCAATA CAGGGAGAAC GTGGCATGTT AGCGAGCGAT
TTAATGCCTT TTATTCGCCA ATTAGTGAAT AGTGATTTAC TCTAG
|
|---|
| Protein sequence | MAQDLSQFPK ALFTQAQVRQ AELSAVSQGA SSLYELVERA GAAAFECLTK HNPNASSVFF
LAGSGNNGAD ALVCARLARA SGMAVSVMMT SVAGTPECQQ ALAHYLKDGG ELLPKAVAPI
LAAKIIVDGL LGTGVRDAVR DDMAEYICAI NDNAAWVLSL DLPSGVIADT GAVAGVAVMA
DVTLCFGGWK QGLLTGKARH YSGELEFAAL GLTPFFAEAS AQRVGKETLK DYFAARARDS
HKGQSGKATV IGGDMGMAGA VRLASEACLR AGAGLVTVIS RPDHQLTVNV SRPELMFWGC
DLVDMEVYLR LGWAQVIVLG PGLGKHDWGY NLFKAVGLSD KPCVLDADAL NLLSNEPRRQ
TNWVLTPHPG EAARLLGCSV AEIEQDRFAA VRAIQQKYGG VVLLKGAGTV IFDGKQMIVA
PVGNPGLASG GCGDVLSGII GALMAQGMDN MQATVLGVVV HGCAADLAAI QGERGMLASD
LMPFIRQLVN SDLL
|
|---|
| |