| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal_0535 |
|---|
| Symbol | |
|---|
| ID | 4842178 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS155 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009052 |
|---|
| Strand | - |
|---|
| Start bp | 597769 |
|---|
| End bp | 600675 |
|---|
| Gene Length | 2907 bp |
|---|
| Protein Length | 968 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640117754 |
|---|
| Product | ATP-dependent helicase HepA |
|---|
| Protein accession | YP_001048933 |
|---|
| Protein GI | 126172784 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGTTCG CCTTAGGTCA ACGTTGGATA AGTGATACCG AGTCAGAGCT TGGTTTAGGA
ACTGTGGTTC AAGTAGAAGG CCGTATGGTC ACTGTTTTAT TCCCTGCCAC GGGTGAGAAT
CGCATGTTCT CCCGAGCAGA AGCCCCTCTG ACACGCGTTA TATACAATCC CGGCGATTCG
GTTGAAAGCC ATGAAGGCTG GAGCCTTGCG GTCAGCGAGT TGACCGAGAA AGACGGGATA
GTGATCTATC ACGGCATTCA CAGTGAGACA GGCGAGCAAG TTACCCTGCG TGAAACCCTG
CTGAACCACA ATATTCGTTT CAATAAACCC CAAGACCGTT TATTCGCCGG CCAAATCGAT
CGCCTCGACC GTTTTGGTGT GCGTTATCAG TGCCAAATGT TGCGCCACAA ACTGGCCTCA
TCGGATTTGC TTGGTCTGCA AGGTCCACGC GTTGGACTTA TTCCGCATCA AATGTGGATT
GCCCATGAAG TCGGTCGTCG CTATGCGCCG CGGGTACTGC TGGCCGATGA AGTGGGTTTA
GGTAAAACCA TTGAAGCGGG TCTGATTATT CACCAACAAC TGCTGACCGG CCGCGCCGAA
CGCATCCTGA TTATCGTGCC CGATACTTTG CGCCATCAGT GGTTAGTGGA AATGCTGCGC
CGCTTTAACC TGCGCTTCTC GGTATTTGAT GAAGATCGTT GTGTAGAAGC CTATGCCGAT
CACGACAATC CTTTCTATAC AGAACAATTA GTGATTTGTT CACTCGAATT ACTGCGTAAG
AAAAAACGTC TCGATCAAGC CCTAGATGCC GATTGGGATC TGTTAGTGGT TGACGAAGCA
CACCACTTAG AATGGACCGA AGAAGCGCCA AGCCGCGCCT ATCAAGTGGT TGAAGCATTA
AGCGAAGTGA TCCCAGGTGT TTTGCTATTA ACCGCAACGC CGGATCAACT TGGCCATGAA
AGTCACTTCG CCCGTTTGCG CCTGCTCGAT CCGGATCGTT TCTACGATTA CGATGCCTTC
CTAGCCGAAG AAGACAGCTA TAAAGACGTC GCCATTGCCG CCGAAGCGCT GGCTGGCAAC
ACTAAATTAC CCGACGCCGC CATCAACAGC TTGACCGAAT TACTGGGCGA GAAAGACATC
AGCCCAAGTA TTCGTTTAAT CCAAGCCGAC GGCATTGATG CCGAAGTACA GCAAGCTGCT
CGCAGCGAAT TACTGCAAGA ATTACTCGAC CGTCACGGTA CTGGCCGCGT CTTATACCGC
AACAGCCGCG CCTCAGTAAA AGGCTTCCCT AAGCGTTTCT TTAACGCTTA CCCACACGCC
ATGCCAGATC AATATCAAAC AGCCGCACGC GTCAGCGGCA TGATGGGCGG ACACAAGTCA
TTAGAGGCGA AAGCGGCGCA AGCCCTGAGC CCTGAAAAGC TGTATCAAGA ATTTGAAGAT
AACAGCGCCA GTTGGTGGAA GTTTGATCCC CGTGTGGATT GGTTAATTGA GTTCTTAAAA
TCACACCGCA GCAAAAAAGT GCTGATCATC GCCAGCCAAG CGGAAACCGC CCTGAGCTTA
GAAGAAGCCC TGCGCACCCG CGAAGGGATT CAAGCGACGG TATTCCACGA AGGCATGTCG
ATTATCGAGC GCGATAAAGC CGGCGCTTAC TTTGCCCAAG AGGAAGGCGG CGCACAGGCA
CTGATCTGTT CTGAAATTGG TTCTGAAGGC CGTAACTTCC AGTTTGCCAG TCACTTAGTA
CTATTCGATC TGCCGCTAAA CCCAGATCTA TTGGAACAGC GCATCGGTCG TTTAGACCGT
ATCGGCCAGA AAAATGATAT CCAAATTCAC TTGCCGTACC TTGAAGACAC CGCCCAAGAA
CGTTTGATGC AGTGGTATCA CCAAGGGCTA AATGCCTTCG AACTGACTTG TCCGAGTGGC
CATGTGCTTT ACAGTGAATT TGCCGAAGAT CTGTTAAACG TGCTTGCGGT TGATGACAGC
GACGAGCTGA CAAACCTGCT CAATCACACC CAGAGCCGTT ATAAAGAACT CAAGCACGCC
ATGGAGCAAG GCCGCGACAA ACTGCTGGAA ATCAACTCAC ACGGCGGCGA GAAGGCAATG
GCTATCGTCC AACGCCTCGC CCAGAATGAT GGTGATACCC ATTTGATCGG TTCAGTGATC
CGTCTGTGGG ATATTATCGG TGTCGATCAA GAAGATAAGG GTGAAAACTC AATCATTCTG
CGCCCGAGCG AGCACATGAT GTTCCCAACC TACCCTGGCT TGCCAGAAGA TGGCGTGACT
GTGACCTTCG ACCGTGACAC AGCGTTATCT CGCGATGATA TTGCGCTGAT CACCCAAGAG
CATCCACTGG TGCAAACGGG GCTAGATCTG ATCACAGGTT CAGAAACTGG CACCACCAGC
GTCGCAATTC TAAAAAATAA AGCCCTGCCT GCAGGTACCT TATTCTTAGA ACTCATCTAC
ATGGCCGATG CTTCTGCACC TAAGTCGAGC CAGTTGTACC GTTATTTACC GCCTACACCC
ATTCGCGTGT TGCTGGATAA AAATGGTAAC GACCTGTCGG CTAAAGTGGA TTACGCCAGT
TTCGATAAGC AATTGAGCGC GGTGAATCGT CACATTGGCG GCAAGTTAGT CACCGCATCT
CAGCCAATTC TGCATCCGTT ATTTGCTAAG GGTGAAGAAT ATGCTCAAGT GGTTGTCGAT
GAAATGGTCG CCCAAGCCAG AGAGAAAATG ACTCAGCAAC TAAGCGCAGA GCGGAGTCGT
TTAGAGTCAC TTAAGGCGGT AAACCCCAAT ATCCGAGAGG AAGAATTGGA ATACCTGCGC
AATCAGATGC AAGAGTTAAA CACTTATCTG GATGCCAGCC AGTTACAACT CGATGCGATC
CGTATGGTGC TCGTCAGCCA CGTATAG
|
|---|
| Protein sequence | MPFALGQRWI SDTESELGLG TVVQVEGRMV TVLFPATGEN RMFSRAEAPL TRVIYNPGDS
VESHEGWSLA VSELTEKDGI VIYHGIHSET GEQVTLRETL LNHNIRFNKP QDRLFAGQID
RLDRFGVRYQ CQMLRHKLAS SDLLGLQGPR VGLIPHQMWI AHEVGRRYAP RVLLADEVGL
GKTIEAGLII HQQLLTGRAE RILIIVPDTL RHQWLVEMLR RFNLRFSVFD EDRCVEAYAD
HDNPFYTEQL VICSLELLRK KKRLDQALDA DWDLLVVDEA HHLEWTEEAP SRAYQVVEAL
SEVIPGVLLL TATPDQLGHE SHFARLRLLD PDRFYDYDAF LAEEDSYKDV AIAAEALAGN
TKLPDAAINS LTELLGEKDI SPSIRLIQAD GIDAEVQQAA RSELLQELLD RHGTGRVLYR
NSRASVKGFP KRFFNAYPHA MPDQYQTAAR VSGMMGGHKS LEAKAAQALS PEKLYQEFED
NSASWWKFDP RVDWLIEFLK SHRSKKVLII ASQAETALSL EEALRTREGI QATVFHEGMS
IIERDKAGAY FAQEEGGAQA LICSEIGSEG RNFQFASHLV LFDLPLNPDL LEQRIGRLDR
IGQKNDIQIH LPYLEDTAQE RLMQWYHQGL NAFELTCPSG HVLYSEFAED LLNVLAVDDS
DELTNLLNHT QSRYKELKHA MEQGRDKLLE INSHGGEKAM AIVQRLAQND GDTHLIGSVI
RLWDIIGVDQ EDKGENSIIL RPSEHMMFPT YPGLPEDGVT VTFDRDTALS RDDIALITQE
HPLVQTGLDL ITGSETGTTS VAILKNKALP AGTLFLELIY MADASAPKSS QLYRYLPPTP
IRVLLDKNGN DLSAKVDYAS FDKQLSAVNR HIGGKLVTAS QPILHPLFAK GEEYAQVVVD
EMVAQAREKM TQQLSAERSR LESLKAVNPN IREEELEYLR NQMQELNTYL DASQLQLDAI
RMVLVSHV
|
|---|
| |