Gene Memar_2127 details

Gene Information

• Locus tag: Memar_2127
• ID: 4846928
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methanoculleus marisnigri JR1
• Kingdom: Archaea
• Replicon accession: NC_009051
• Strand: -
• Start bp: 2118160
• End bp: 2120025
• Gene Length: 1866 bp
• Protein Length: 621 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 640116835
• Product: multi-sensor signal transduction histidine kinase
• Protein accession: YP_001048032
• Protein GI: 126180067
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG0642] Signal transduction histidine kinase
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0793237
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCATCTC GTACGACGGA GGGCCCCCTC CGGCACCTGC AGGAAGGCGA CCTCCGCGAA 
CCCGGGAAAA TTCTGGTAGC CGGCGCTTCG GGCACGGCGA TCTTAGCCGC CCTTCTCGTG 
GAGCCGCCCG GCACCAACCT CATTCTCTGG GCCCTTCTCT TCGTCCCGGC CGCGGCGGTC 
GGCTACCTCT ACCGCGAGAA GGGGATCGTT GCCGCCACCG TGCTCGGGCT CGTCTATCTC 
GGCATCACGG CAGGGCGCGC CTACCCGCCC AACCCGAGTA TATTCCTCCC CTTCGTCGCC 
ATGGTCGCTC TTGCGTCGCT CGCCTCGACC GTCGGCTACT CGGCCCGGGA GCAGATCCAC 
TACCGGGAGG CCATGGAACG GGCTCCCGGC GGCGCGTTTC TTCTCAGGCG GGATGACGAA 
TCGATAGCGG ACGCGAACCG CGACTTTGCG GAACTCCTCG GGTATGCAAG GGGAGACCTG 
GAAAACCTCC CGCTATCGAA GATCTGGCCG TATGCCGACG ACCGCGAGCG GTTCTTTGCG 
CAGGCGCAGC CGGGCGCAGG CAACGTGGTC GTCGAGACGC AGTTCCTCGG CCGGGACGGC 
AGAACGCGCT GGCTCGTTCT CCGGGGGCGC TGCCTCGACG ATGTCGTCGT CACCTGCCGG 
GTCTCGGAGA TCACCCGGTA CAAGGAGGCG GAAGCGGCCC TGAACGCCGA ACGCCGCCGT 
CTCTTCTCTA TCCTGGACAC CCTTCCCGCT TACGTCACCC TGCAGGGGGA GGATCACACC 
ATCCGGTTTG CCAACAGGGC GTTCCGGGAG ACCTTCGGCG ACCCGGAGGG CGGGCTCTGC 
TACGAGGTGC AACGCGGCTC CCGCAGACCC TGCAACCCCT GCAAGGGGGC GATGGTCTTC 
ACCCTCCGGA GCCCGCAGCA CTGGGAATGG GATCATATGA ACGGGAAAAC CTACGAGGTT 
CACGCCTACC CGTTCACCGA TACGGACGGG GCGCCCCTGA TGCTGCAGCT CGGGATCGAT 
ATCACCCAGC GGGTGCAGGC GGAAGAGGCG CTCAAGGGGT TTGCCGGGAA CCTCCAGACG 
AAGAACCGGG AACTGGAGAT GCTACGGAGC CAGCTCTCCG TCGTCAACCA GGAACTCGAC 
GCGATGGTCC GGGAGCGGAC CGCCGACGTG GAGAAACTCC TCGCCCAGAA GGACGAGTTC 
ATATCGCAGC TCGGCCACGA CTTGAAGACG CCCTTAACGC CGCTGGTCGC CCTCATGCCG 
AGGATCGTCG CGCGGGAGCA GGACCCGGAT CTCCGGCGCC TCCTCGAGAT CGCCGGCCAC 
AACGTCACTT ACATGAAGGA CCTGGTCCAG AAAACCCTGC AGCTCGCCCG GATGAACTCC 
CTCTACGTCG AGCTCGATCT CGAACCCCTC GACCTCAAGA CGGAACTCGA CAACACGCTC 
CGGAACTACG CCGTCCTCTT CAAGACGAAG ACCATCACCC TCAACAACAA CATCCCGGCC 
GGGATCGCCG TCAGGGCCGA CCGGGTTCTC CTCGGGGAGA TCTTCAACAA CCTGATCGCC 
AACGCCGTCA AGTACATCGA GGACGGGAAA GGGACGATCA CCATCGACGC CGCCCGCGAG 
CAGGAGGCCG TGGTCGTCTC GGTCAGGGAT ACCGGGATCG GCATGTCCCG CGAGCAGCTC 
GAAAAGGCTT TTGCCGAGTT CTACAAGGCC GACGCCTCCC GCCACGACCT CGAGTCGCCG 
GGGCTCGGCC TCACGATCTG CCGGCGGATC GTGGAACGGC ACGGAGGACG GATATGGGCC 
GAGAGTGCCG GCGAGGGGAG GGGTTCGACC ATCATATTCA CCCTTGAGGC AGTAGAAACG 
CTGTAA 

 

Protein sequence

MASRTTEGPL RHLQEGDLRE PGKILVAGAS GTAILAALLV EPPGTNLILW ALLFVPAAAV 
GYLYREKGIV AATVLGLVYL GITAGRAYPP NPSIFLPFVA MVALASLAST VGYSAREQIH 
YREAMERAPG GAFLLRRDDE SIADANRDFA ELLGYARGDL ENLPLSKIWP YADDRERFFA 
QAQPGAGNVV VETQFLGRDG RTRWLVLRGR CLDDVVVTCR VSEITRYKEA EAALNAERRR 
LFSILDTLPA YVTLQGEDHT IRFANRAFRE TFGDPEGGLC YEVQRGSRRP CNPCKGAMVF 
TLRSPQHWEW DHMNGKTYEV HAYPFTDTDG APLMLQLGID ITQRVQAEEA LKGFAGNLQT 
KNRELEMLRS QLSVVNQELD AMVRERTADV EKLLAQKDEF ISQLGHDLKT PLTPLVALMP 
RIVAREQDPD LRRLLEIAGH NVTYMKDLVQ KTLQLARMNS LYVELDLEPL DLKTELDNTL 
RNYAVLFKTK TITLNNNIPA GIAVRADRVL LGEIFNNLIA NAVKYIEDGK GTITIDAARE 
QEAVVVSVRD TGIGMSREQL EKAFAEFYKA DASRHDLESP GLGLTICRRI VERHGGRIWA 
ESAGEGRGST IIFTLEAVET L