| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Memar_1814 |
|---|
| Symbol | |
|---|
| ID | 4848342 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanoculleus marisnigri JR1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009051 |
|---|
| Strand | + |
|---|
| Start bp | 1801108 |
|---|
| End bp | 1802160 |
|---|
| Gene Length | 1053 bp |
|---|
| Protein Length | 350 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640116514 |
|---|
| Product | isopentenyl pyrophosphate isomerase |
|---|
| Protein accession | YP_001047722 |
|---|
| Protein GI | 126179757 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1304] L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases |
|---|
| TIGRFAM ID | [TIGR02151] isopentenyl-diphosphate delta-isomerase, type 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGAAG AGACCGCCAC GTCCTCGAGA AAACGGGATC ACCTGCAGAT ATGCTGCGAG
CAGCCCGTCG AGGCCGGCAA CGCCGGATTC GGGGACGTGC GCCTGGTTCA TAACGCTCTT
CCCGAGTGCG ATATGGACGC GATCGAGACG AAGACGCGGT TCCTCGACAG AGCGCTTGGC
TCTCCCCTCT TCATTGCAGC GATGACCGGA GGACATCCGG ATACCCTCGA GGTGAACCGG
CGGCTGGCAC GTGCCGCCGA ACGGTATAAC CTCGGCATGG GTGTCGGTTC TCAGCGAGCG
GCACTGGAAA AGCCCGAACT GGAGGGAAGT TTCACCGTCG TGCGGGAGGA AGCGCCACAT
GCGTTCCTCT GCGCGAACCT TGGAATCATC CAGCTCCGCG ACCACGGCAT CGAGTGGGCG
GAGCGGGCTG TCGAGATGAT CGATGCACAG GCGATCGCCA TCCACGTCAA TTCGCTTCAG
GAAGCGATTC AGCCGGAAGG CGATCACAAC GCAGAGGGGT GCATCGAAGC GCTGCGTGAC
CTCTGCAAAG AGTTCTCCTA CCCCGTCATC GTGAAGGAGA CAGGTTCCGG CATATCAGCC
GGGACCGCAA GGGTTATCCG GGGCGCGGGA GCAAGCGCCA TCGATATCGG CGGCTACGGA
GGCACGTCGT GGGCGAAGAT AGAACGCCTG CGGGCGAGCG GCTCCGAACT CGCCGATCTC
GGGGAGGCAT TCCTCTCGTG GGGCATACCG ACGGTGGTGA GCCTCCGTGA GGTGCGGACG
GCAGGAGGCC CGATCATCGC GACGGGCGGA CTGCGGTCGG GGATCGATAT CGCGAAAGCC
GTTGCTCTCG GGGCGGACCT CGGGGGCATG GCGCTCCCCC TCTTAAAACC GGCCATGGAG
AGCGATGATG CTCTCTCTCT GGCCGTCGAG GCGATGCACC GCGAACTTCG CGTGGCGATG
TTCCTGACGG GATCCCGATC CATTGCGGAT CTCCGGCACG CCAGAACGTA TATAACCGGC
CTGACCCGGC AAATGATTGA AAACAGCGAC TAA
|
|---|
| Protein sequence | MTEETATSSR KRDHLQICCE QPVEAGNAGF GDVRLVHNAL PECDMDAIET KTRFLDRALG
SPLFIAAMTG GHPDTLEVNR RLARAAERYN LGMGVGSQRA ALEKPELEGS FTVVREEAPH
AFLCANLGII QLRDHGIEWA ERAVEMIDAQ AIAIHVNSLQ EAIQPEGDHN AEGCIEALRD
LCKEFSYPVI VKETGSGISA GTARVIRGAG ASAIDIGGYG GTSWAKIERL RASGSELADL
GEAFLSWGIP TVVSLREVRT AGGPIIATGG LRSGIDIAKA VALGADLGGM ALPLLKPAME
SDDALSLAVE AMHRELRVAM FLTGSRSIAD LRHARTYITG LTRQMIENSD
|
|---|
| |