Gene Memar_1800 details

Gene Information

• Locus tag: Memar_1800
• Symbol: rps13p
• ID: 4846572
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methanoculleus marisnigri JR1
• Kingdom: Archaea
• Replicon accession: NC_009051
• Strand: +
• Start bp: 1792918
• End bp: 1793367
• Gene Length: 450 bp
• Protein Length: 149 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 640116499
• Product: 30S ribosomal protein S13P
• Protein accession: YP_001047708
• Protein GI: 126179743
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0099] Ribosomal protein S13
• TIGRFAM ID: [TIGR03629] archaeal ribosomal protein S13P

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 0.411699
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATGAAG AAGAGATAAA GTACTTTGTT CGAGTCAGAA ACACTGATCT CGACGGCACC 
AAGGCAGTGC ACATCGCACT GACCGGGATC AAGGGCATCG GTCCGCACAC GTCGCGCACC 
ATCACCGCCC TTGCCGCCGT GGACCCGCAT GCCATACTCG GCAAGCTGGA CGACGAATCC 
GTCGGACGGA TCGCAAACGC CGTCGACACC TACACCGAAC AGGTGCCCGA CTGGATGGTA 
AACCGCCAAA AAGACGTCTA CACCGGAGAG GTCCGCCACC TCCTCGGAAC CGATCTCACC 
ATGATGAACG ACGACGACGT CAACCGCATG AGAAAGATGC GGAGTTACCG CGGCATCAGG 
CACGAGACCG GGCAGAAGGT CCGCGGCCAG CGCACCAAGT CCACCGGAAG AACGGGCACG 
ACCGTCGGCG TCAAGAGGAA GAAAGACTGA 

 

Protein sequence

MDEEEIKYFV RVRNTDLDGT KAVHIALTGI KGIGPHTSRT ITALAAVDPH AILGKLDDES 
VGRIANAVDT YTEQVPDWMV NRQKDVYTGE VRHLLGTDLT MMNDDDVNRM RKMRSYRGIR 
HETGQKVRGQ RTKSTGRTGT TVGVKRKKD