Gene Memar_1572 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMemar_1572 
Symbol 
ID4845979 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanoculleus marisnigri JR1 
KingdomArchaea 
Replicon accessionNC_009051 
Strand
Start bp1575631 
End bp1578222 
Gene Length2592 bp 
Protein Length863 aa 
Translation table11 
GC content64% 
IMG OID640116265 
Productvalyl-tRNA synthetase 
Protein accessionYP_001047483 
Protein GI126179518 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0525] Valyl-tRNA synthetase 
TIGRFAM ID[TIGR00422] valyl-tRNA synthetase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.330125 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGCCGT CACATCAACT ACCCAAAAAC TACGATATCG AAGAAGTGGA GACGCGCTGG 
CAGGATACCT GGCGGGATGA GGACAACTAT TTCGACCCCG CCTCGTCGAA ACCACGGTTC
ATCATCGACA CGCCGCCGCC CTATCCCACC GGGAACTTCC ATATCGGGAA CGCGTTAAAC
TGGTGCTATA TCGACTTCAT CGCGCGGTAC AAGCGCATGC GCGGCTACAA CGTCATGTTC
CCGCAGGGGT GGGACTGCCA CGGCCTCCCG ACCGAGGTGA AGGTCGAGGA GACCTACGGG
ATCACCAAGA ACGATGTACC GCGGGAGAAG TTCCGGGAGA TGTGCCGCGA CCTCACGCTT
TCAAATATCG AGAAGATGCG GGCGACCATG CGGCGGCTTG GGTTCTCGAC CGACTGGAGC
CACGAGTACA TCACCATGCT CCCGGACTAC TACAGAAAGA CCCAGGCGTC GTTTTTGCAG
ATGCTCAAAG CCGGCGACAT CTACCAGAGC GAGCATCCGG TGAACTTCTG CACCCGGTGC
GAGACGGCCA TCGCGTTCGC CGAGGTCAAC TACGCGCCCC GCACCACCAA ACTCAACTAC
TTCGACTTCG ACGGCGTCGA GATCGCCACC ACCCGGCCCG AGCTGCTCGC GGCCTGCGTT
GCCGTGGCCG TCCATCCCGA AGACGAGCGG TATCGCGGGA TGAAGGGGAA GAGGCTCACC
GTCCCGATCT TCGGTCACGA TGTTCCGGTC ATCGAGGACG TCGCGGTCGA CCCGGAGTTC
GGCAGCGGCG CGGTGATGAT CTGTACGTTC GGCGACAAGA CGGACGTCTA CTGGTGGAAA
CAGCACGGCC TGGACCTCCG CAAGGCTATC GACCGGCAGG GCATCATGAC CGCAACCGCG
GCCCCCTATA CGGGGATGTC GTCTGAGGAC TGCAGGGAAG CGATCCTCGC CGACATGGAG
AAGGCCGGGA TCCTGAAGCG GCAGGAGGAA CTCGAGCAGC GGGTGGGGAC CTGCTGGCGG
TGCAAGACCC CGATCGAGAT CCTCTCGGAG CGGCAGTGGT TCGTCCGGGT ACACCAGGAC
GAGATCCTGG AATCGGCGCG GAGGGTCTCC TGGACACCGG AGCATATGTT CGCCCGGATG
GAGAACTGGG CGAACTCCAT GGAATGGGAC TGGTGCATCT CCAGGCAGCG GATCTTCGCG
ACCCCTATCC CCGTCTGGTT CTGCACTGCC TGCGGCGAGA TGGTCATCCC GGCCGAGAAA
GACCTCCCGA TCGACCCGAC GGTCGATAAG CCGAAGGCAC CCTGCCCGAA GTGCGGGGGA
TCGGACTTCA CCGGCGAGAC GGACGTGCTC GACACCTGGA TGGACTCCTC GATATCGGTG
CTCCACGTCA CCGGGTGGGA CGGAACCGGC AAACCTCCGT TCTTCCCGGC GCAGATCCGC
CCTCAGGGAC ACGATATCAT ACGGACGTGG GCGTTCTACA CCATCCTCCG GGCGAAGGCG
CTGGTCGGCG GCCACCCCTG GGACGAGATC CTGGTCAACG GGATGGTCCT CGGGGAAGAC
GGGTTCAAGA TGAGCAAGAG CCGGAGCAAC ATCATCTCTC CCGAGGCGAT CGTCGGGGAT
TACGGCGCGG ACGCGCTCCG GCAGTGGGGC GCCGGGGGTG CCGCCACCGG TTCGGACATC
ATGTTCAACT GGAACGACGT CGTCGCGGCG TCCCGGTTCC AGACCAAACT CTGGAACATC
TTCCGGTTTG TGATGGGACA CCTGGAGAAG GGGGCCGATC CCGATGCACC GGTGACGGAA
CTCACCGACC GGTGGCTGCT CGTCCGGCTC TCCGAGACCG TGGCGGAGGT CACCGCCGCG
ATGGAGGGCT ACCAGTTCGA CCGGGCGCTC AGGGCGATCC GGGAATTTGC CTGGAACACG
CTCGCCGACG ACTACATTGA GATCGTGAAA GGCCGGCTGT ATGCGGCCGA CAGCAGCAGG
GCCAGTGCCT GCAGCGCGCT CCGGATGACG ATGGACGTCC TCTGCCGCCT GCTTGCCCCG
ATCATCCCGC ACTTCGCGGA AGAGTGCTAC CATAACCTCG CCGGCGAGAG CGTGCACAAA
GAAGCCTGGC CGGACTTTTC ATACGCCGAC GACGAAGCGC GGCGCCACGG CGATCTCCTC
GTGAAGACGG TCGCCGAACT CCGGCGCTAC AAGCATGATA AGGGCATGGC ACTGAACGCC
CCGCTCGGCC ACGTCATGAT CTACGCGCCG GAGCCGGTCG ACGACGCCGG CGACGCCGGA
CGTGCCCTCA ATGCCGATGC GCGCTGGAGC ACCGGCACGC CCCGGCTCGA GGAGGTCGTG
AGCGGCGTGG ACTTCAATAT GGCGGTCATC GGCCCGGTGC TCAGGAAGCA GGCCCGCGGG
TTCATGCAGG CAGTGGAGGC GCTCCCGCCG GAACTGCTCA AGAACCCGCC TGCGACCGTG
ACGGTCGCAG GCGAGGATAT TCCGGTTCCG GCCAATTCCT TCACGCCGAA GGTCGCCTAC
CGGGTGGCGG GAGAAGAGGT GGACGTCCTC ACGCTCGGGG ACGTCGTCGT GACGATCGGG
CACCAGCCCT GA
 
Protein sequence
MSPSHQLPKN YDIEEVETRW QDTWRDEDNY FDPASSKPRF IIDTPPPYPT GNFHIGNALN 
WCYIDFIARY KRMRGYNVMF PQGWDCHGLP TEVKVEETYG ITKNDVPREK FREMCRDLTL
SNIEKMRATM RRLGFSTDWS HEYITMLPDY YRKTQASFLQ MLKAGDIYQS EHPVNFCTRC
ETAIAFAEVN YAPRTTKLNY FDFDGVEIAT TRPELLAACV AVAVHPEDER YRGMKGKRLT
VPIFGHDVPV IEDVAVDPEF GSGAVMICTF GDKTDVYWWK QHGLDLRKAI DRQGIMTATA
APYTGMSSED CREAILADME KAGILKRQEE LEQRVGTCWR CKTPIEILSE RQWFVRVHQD
EILESARRVS WTPEHMFARM ENWANSMEWD WCISRQRIFA TPIPVWFCTA CGEMVIPAEK
DLPIDPTVDK PKAPCPKCGG SDFTGETDVL DTWMDSSISV LHVTGWDGTG KPPFFPAQIR
PQGHDIIRTW AFYTILRAKA LVGGHPWDEI LVNGMVLGED GFKMSKSRSN IISPEAIVGD
YGADALRQWG AGGAATGSDI MFNWNDVVAA SRFQTKLWNI FRFVMGHLEK GADPDAPVTE
LTDRWLLVRL SETVAEVTAA MEGYQFDRAL RAIREFAWNT LADDYIEIVK GRLYAADSSR
ASACSALRMT MDVLCRLLAP IIPHFAEECY HNLAGESVHK EAWPDFSYAD DEARRHGDLL
VKTVAELRRY KHDKGMALNA PLGHVMIYAP EPVDDAGDAG RALNADARWS TGTPRLEEVV
SGVDFNMAVI GPVLRKQARG FMQAVEALPP ELLKNPPATV TVAGEDIPVP ANSFTPKVAY
RVAGEEVDVL TLGDVVVTIG HQP