| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Memar_1482 |
|---|
| Symbol | |
|---|
| ID | 4848247 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanoculleus marisnigri JR1 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009051 |
|---|
| Strand | - |
|---|
| Start bp | 1482183 |
|---|
| End bp | 1484918 |
|---|
| Gene Length | 2736 bp |
|---|
| Protein Length | 911 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640116174 |
|---|
| Product | UvrD/REP helicase |
|---|
| Protein accession | YP_001047393 |
|---|
| Protein GI | 126179428 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0495505 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCTTT CCCCTGACCA ACTCACCGAA AAAATCCTCA ACGAACCCAG GCCTCTTTCT
GATCGACAAC GGCGTGCTGT CCTCTGCGAT CGCACTCACA TCCGCATTAT TGCAGGCGCA
GGGGCTGGAA AGACAGAGAC TCTGACCCGG CGGATCGTCT ACCTCCTCCT CGTACAACAG
GTAGAGCCGT CTGCAATTGT CGCTTTCACG TTCACGGAAA AAGCAGCACA GAGTATGAAG
AGCCGTGTGT ACGAGCGTGT GAAGCACCTT GGCGGAGATG AGATCTGTGC CCGCCTCGGG
GAGATGTTCA TTGGCACCAT TCACGGCTAC TGCTATCGTC TTCTGGAGGA GCACTTCGGG
TACGGGGACT GGGGCGTGCT TGATGAAAAA CAGGAGATGG CGTACCTTAT GCGGGTCGGG
TGGGCTCTGG GGCTCGGAAG ATCCGGTTAT TACGCTACCA ACTGTGAAGA TTTCGTCAAT
GCCCTGAATG TCTACTACGG CGAGATGATC CCGGAAGAGG GTCTAAGGAA AAAGAAAGAC
AGAGAATTCC TTGAAAAACT GCGCCGTTAC GAGGCGTCAC TGGATCAACA CAAGCGGCTC
ACCTTCAACC GCATGGTGCA GCTTGCAGTG GAGAACCTGC AGCACCGTCC TGAAGTGGCC
GAACACGTAA AATACCTCAT TGTTGACGAG TACCAGGACA TTAATCACGC ACAGGATGAA
CTCATCCGGC TGATAGGGCT GGGGGGGAGC ATCTTCGTTG TCGGCGATCC GCGGCAGACA
ATTTACCAGT GGCGTGGCTC CGACGAACAG TATTTCGAGG AGTTTACTAC GCGGTACCCG
GAGGCAGTCA CCATCCACAT AACCGAGAAC CGCCGTTCGA CCGTAGCGGT GATCGAGACG
GCTAACGGGT TCTCGGACAC GTTTGAGGAC CAGCACTACG ACCACATGGA CCCGGTTCGC
CGTGAGCAGG GCGGGGCGTA TCTGGCAGAG ATGCAGAGTG ATATAACCGA GGTAGACTGG
ATTGCGGATC AGATCCAGGC GCTTGTTAGA GAAGAGAAAT GCAGTTACAG CGACATTGCG
CTCCTCTTTC GGAGCGTGAG CACCTCGGCG CCCCCCTTCA TCGATGAGTT CAGGCGCCGC
GATATACCCT TTGTCGTTGG CGGAAAAGTG GGCTTGTTCC GCCGCCCGGA GATCCTGGGC
ATAGGGCAGT TGTTTGCGTG GCTGTGGGAA GATGGGTTCT GGCAGCAGGG CAAGTGGTCA
AGGTTGCCTG CTCTCCGAGG CGAGGATCTG CTCGAAGAGG CAGTGGTGAA CTGGAACCAG
GGAATTCCAG ATCTGGCACT GGAGGCTTCC GATGTACTGA ACCTTCGTCG TTGGAAGGAC
TCGGTGCTGA ACAGTACCTA CGATAACTTC TCTCAAGTCT TCGGGGAACT GCTCGTCCTG
CTCGGGTACC ACGGGCTCGA TCCTGACGAT GTACGCCATG CGGTCATCAT GGCGAATCTG
GGCAGGTTCA ACACGCTCCT TACGGATTAC GAGACAGCAA TTATGCTTGG GGGACGGCGC
AGGAACTGGG AGACCGATCT GAAAGGGCTG TGCTGGTACC TGAACACCTA CGCGTCCTCA
AAGTACGAGG AACAGACCGG CGACGACATC GGTGGCGTGG ACGCTGTGCA ACTGGTGACG
ATCCACCAGA GCAAGGGTCT GGAGTGGCCG CTGGTGTTTG TGCCCTGCAT GGTCCGGCAA
CGGTTCCCGT CAAGCATGGT GGGCAAGGGG AGAACCTGGC TCATATCCCC GGAGCTCTTC
GACGTGGCGA AGTACGAGGG GGACCTGGAG AGCGAACGCA AACTCATGTA TGTGGCGCTG
ACCCGGGCGA AGGACGTGGC CGTGGTGAGT TACTTCACGT CCATGAACGG GCGACGAAAA
GGACGAAGCG CTTTTGTGGG TGACATCGAG GATCTGCCTC ACGTCGAGCC CCTCTCACAG
AGAGACACAC TGCCGGATCA TGATTATGCA ACCGGCGGCG CTGCGGACGA GCTGCGTACC
TTCTCTGCCG GTGAGATTGT GGACTACGGG AAGTGCGGCT ACTTCTACAG GCTTCGGCAT
ATCTGGGGAT ACGAGCCGGG TCTCACTGAT TACCTTGGAT ATGGGCAGAC TCTGCACTTC
TGCCTCCGGG AAGCTGCGGA CCTGATGAAG AACGAGGATC TGTCTCCGAT GATTGCGGTG
GCAACGGCAG TGGACCGGAA CTTCTACATG CCGTTCATGA CCGAGGGACG AATGGAGAAG
ATTAAGCGCG CAGCGAAGAA CCATCTAATG AGATTTGCGG AGAAGTACCG CGACGATATG
CTCCGGATCC GGGAAGTGGA GACGAGGGTC GAATTCCCGG TGCAGAACGC CATTGTGGCC
GGGAAGGTGG ATGTCATCCT CCATGATGGG GATGCTGTGG AGGTGCGCGA CTACAAGACC
TCCGACACGG CGACAACACC CGAGGATTCG GCGCTCCAGG TGCAACTTTA CACCCGTGGC
CTCTGCGTGC TCGGCGAGAC TGTCTCCCGG GGTTCGGTGG CATTCCTCGA GGAGGCTGCT
GTGGACGCTG TGGATGTGAC CGAGCAGGCC GTTGCAGGGA CGATGGCACG TGTAGAGGAG
GATATCGGAC GGATTCTCTC GGGCGACTTC ACGGCATGTC CGGGAGCGGT CTGTGAGCGG
TGCGATTATC AGGGCATTTG CAGGTGGCGA GCATAA
|
|---|
| Protein sequence | MSLSPDQLTE KILNEPRPLS DRQRRAVLCD RTHIRIIAGA GAGKTETLTR RIVYLLLVQQ
VEPSAIVAFT FTEKAAQSMK SRVYERVKHL GGDEICARLG EMFIGTIHGY CYRLLEEHFG
YGDWGVLDEK QEMAYLMRVG WALGLGRSGY YATNCEDFVN ALNVYYGEMI PEEGLRKKKD
REFLEKLRRY EASLDQHKRL TFNRMVQLAV ENLQHRPEVA EHVKYLIVDE YQDINHAQDE
LIRLIGLGGS IFVVGDPRQT IYQWRGSDEQ YFEEFTTRYP EAVTIHITEN RRSTVAVIET
ANGFSDTFED QHYDHMDPVR REQGGAYLAE MQSDITEVDW IADQIQALVR EEKCSYSDIA
LLFRSVSTSA PPFIDEFRRR DIPFVVGGKV GLFRRPEILG IGQLFAWLWE DGFWQQGKWS
RLPALRGEDL LEEAVVNWNQ GIPDLALEAS DVLNLRRWKD SVLNSTYDNF SQVFGELLVL
LGYHGLDPDD VRHAVIMANL GRFNTLLTDY ETAIMLGGRR RNWETDLKGL CWYLNTYASS
KYEEQTGDDI GGVDAVQLVT IHQSKGLEWP LVFVPCMVRQ RFPSSMVGKG RTWLISPELF
DVAKYEGDLE SERKLMYVAL TRAKDVAVVS YFTSMNGRRK GRSAFVGDIE DLPHVEPLSQ
RDTLPDHDYA TGGAADELRT FSAGEIVDYG KCGYFYRLRH IWGYEPGLTD YLGYGQTLHF
CLREAADLMK NEDLSPMIAV ATAVDRNFYM PFMTEGRMEK IKRAAKNHLM RFAEKYRDDM
LRIREVETRV EFPVQNAIVA GKVDVILHDG DAVEVRDYKT SDTATTPEDS ALQVQLYTRG
LCVLGETVSR GSVAFLEEAA VDAVDVTEQA VAGTMARVEE DIGRILSGDF TACPGAVCER
CDYQGICRWR A
|
|---|
| |