Gene Memar_1318 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMemar_1318 
Symbol 
ID4848234 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanoculleus marisnigri JR1 
KingdomArchaea 
Replicon accessionNC_009051 
Strand
Start bp1302364 
End bp1303623 
Gene Length1260 bp 
Protein Length419 aa 
Translation table11 
GC content66% 
IMG OID640116009 
ProductATP-dependent DNA helicase RecQ 
Protein accessionYP_001047230 
Protein GI126179265 
COG category[L] Replication, recombination and repair 
COG ID[COG0514] Superfamily II DNA helicase 
TIGRFAM ID[TIGR00614] ATP-dependent DNA helicase, RecQ family 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.227704 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATCGCC TGCACCTGAT CCTCCAGCGC TACTTCGGGC ATTCTGCGTT CAACCTCTAC 
CAGCGGGAGA TCATCGAAGA CCTTCTTGCC GGGCGCGACG TCCTCGCGGT GCTCGCGACC
GGAGGGGGAA AATCACTCTG CTACCAGGTC CCCGCGCTCG TCGGCGACGG TGTCGTGCTG
GTGATATCGC CGCTCATCGC CCTGATGAAG GACCAGGTCG ACGACCTGCA GGCCCGCGGG
GTCGGCGCGG AAGCGCTGAA CTCTTCCGGA TCATATGCCG CGACGCGCCG GATCCTCTCG
GAACTCAAAG AGGGGCTTAT CCAGATCCTC TACGTCTCGC CGGAGAAGGC GGTCGGCGAA
GATTTTATCG ACCTGATGGC GTCCCTTCCG GTCACCCTGA TCGCGGTCGA CGAGGCGCAC
TGCATATCGA TGTGGGGGCA CCAGTTCCGC CCGGAGTACC GGTCGCTTTC GGTGCTCAAG
GAACGGTTCC CCGGGGTGCC GATGGTTGCC CTGACGGCGA CCGCGACCCC GGACGTCCGC
GACGACATCG CGCGGCAGCT CAATCTTTCG GACCCTTCGG TCTACGTCGG GAGTTTCAAC
CGCGAGAACC TCCGCTACGT CGTCGTCGGA AAGGAGGAGG ACGCGTACGA GCGGCTCCGG
GCCTATCTGC GGGGCAGGAG AGGGGACGCC GGGATCGTCT ATGTCGCAAC CCGGGACGGG
GCCGAGACGC TCGCGGCACG GCTCCGCGCC GGCGGGATTC CGGCACTCCC CTACCATGCA
GGCATGACGG CGGCCGCCCG GAGAGAGACG CAGGACAGGT TCATCGGCGG GAAGGTTCCG
GTCGTCTGCG CGACGAGCGC GTTCGGCATG GGGATCGACA AGCCGGACGT GCGGTTCGTC
GTCCACTACG ACATGCCCAA GACCCTCGAG GCCTACTACC AGGAGAGCGG CCGGGCCGGA
AGGGACGGCA AGGAGAGCGA CTGCATCCTC TACTACAGCG ACGAAGATGC GCGGCGCCTC
AGATCGTTCA TCGACCGCGA TCTTGCGTCC GAATTCCAGC GCAAGGTCGC ACGCTCGAAA
CTCCAGAGCA TGGTGGATTA CTGCACCACG ACGGAGTGCC GGAGAAAGGC GCTCCTCGGG
TACTTCGGGG AGCGAATCGA GGAGCCCTGC AACGGCTGCG ACGCCTGTGC TCCGGCAGGA
AAGGCTCGTC CCCGGTCCGG GCGCAGGAAA CGCGGTGCCA CCCGCCCGGC ATCCGGCTGA
 
Protein sequence
MDRLHLILQR YFGHSAFNLY QREIIEDLLA GRDVLAVLAT GGGKSLCYQV PALVGDGVVL 
VISPLIALMK DQVDDLQARG VGAEALNSSG SYAATRRILS ELKEGLIQIL YVSPEKAVGE
DFIDLMASLP VTLIAVDEAH CISMWGHQFR PEYRSLSVLK ERFPGVPMVA LTATATPDVR
DDIARQLNLS DPSVYVGSFN RENLRYVVVG KEEDAYERLR AYLRGRRGDA GIVYVATRDG
AETLAARLRA GGIPALPYHA GMTAAARRET QDRFIGGKVP VVCATSAFGM GIDKPDVRFV
VHYDMPKTLE AYYQESGRAG RDGKESDCIL YYSDEDARRL RSFIDRDLAS EFQRKVARSK
LQSMVDYCTT TECRRKALLG YFGERIEEPC NGCDACAPAG KARPRSGRRK RGATRPASG